Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 3098 | 3' | -57 | NC_001493.1 | + | 108981 | 0.66 | 0.875486 |
|
Target: 5'- gAUUCACCGGGUCGccaucucuccccGUGCGgcgGCUgUCc -3' miRNA: 3'- -UGAGUGGCUCAGC------------CAUGCa--CGGgAGc -5' |
|||||||
| 3098 | 3' | -57 | NC_001493.1 | + | 102461 | 0.66 | 0.845184 |
|
Target: 5'- cCUCGgCGGGUCGGggggucgcgACGgccgGUCCUCu -3' miRNA: 3'- uGAGUgGCUCAGCCa--------UGCa---CGGGAGc -5' |
|||||||
| 3098 | 3' | -57 | NC_001493.1 | + | 97739 | 0.66 | 0.845184 |
|
Target: 5'- --aUACCGGGaaGGUguGCGUGCCCgUCa -3' miRNA: 3'- ugaGUGGCUCagCCA--UGCACGGG-AGc -5' |
|||||||
| 3098 | 3' | -57 | NC_001493.1 | + | 48279 | 0.68 | 0.775936 |
|
Target: 5'- -gUUACgGGGUCgGGUGCGccgagGCCCUCc -3' miRNA: 3'- ugAGUGgCUCAG-CCAUGCa----CGGGAGc -5' |
|||||||
| 3098 | 3' | -57 | NC_001493.1 | + | 64461 | 0.68 | 0.757189 |
|
Target: 5'- cCUCGCCuuGGUgGGUGuCGUGCgCUCGu -3' miRNA: 3'- uGAGUGGc-UCAgCCAU-GCACGgGAGC- -5' |
|||||||
| 3098 | 3' | -57 | NC_001493.1 | + | 90911 | 0.68 | 0.757189 |
|
Target: 5'- -aUCACCGGGgUGGaACGUGCCaaguuaUCGg -3' miRNA: 3'- ugAGUGGCUCaGCCaUGCACGGg-----AGC- -5' |
|||||||
| 3098 | 3' | -57 | NC_001493.1 | + | 35041 | 0.69 | 0.707581 |
|
Target: 5'- gUUCACCGGGUCGaacgggggugguuGUAC--GCCCUCGu -3' miRNA: 3'- uGAGUGGCUCAGC-------------CAUGcaCGGGAGC- -5' |
|||||||
| 3098 | 3' | -57 | NC_001493.1 | + | 88800 | 0.96 | 0.016936 |
|
Target: 5'- cACUCACCGAGUCGGUACGUG-CCUCGa -3' miRNA: 3'- -UGAGUGGCUCAGCCAUGCACgGGAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home