miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3098 5' -60 NC_001493.1 + 49011 0.66 0.740813
Target:  5'- gGUgGAGGAACUggagCGGCgcaUGGcGGCCGu -3'
miRNA:   3'- -CAgCUCCUUGAg---GCCGa--GCCaCCGGC- -5'
3098 5' -60 NC_001493.1 + 71743 0.66 0.730308
Target:  5'- uGUCGcAGGAACagugucgUCgCGaGCUCGGUcaGGCCc -3'
miRNA:   3'- -CAGC-UCCUUG-------AG-GC-CGAGCCA--CCGGc -5'
3098 5' -60 NC_001493.1 + 75137 0.66 0.721639
Target:  5'- cUCGAGGGAa-UCGGgUCGGUgcuGGCCc -3'
miRNA:   3'- cAGCUCCUUgaGGCCgAGCCA---CCGGc -5'
3098 5' -60 NC_001493.1 + 28827 0.66 0.720672
Target:  5'- --aGAGGGACgagCUGGCcaaagagUCGGcGGCCa -3'
miRNA:   3'- cagCUCCUUGa--GGCCG-------AGCCaCCGGc -5'
3098 5' -60 NC_001493.1 + 29982 0.66 0.710965
Target:  5'- aUCGcGGAuCUCagGGCccaauuaUCGGUGGCCa -3'
miRNA:   3'- cAGCuCCUuGAGg-CCG-------AGCCACCGGc -5'
3098 5' -60 NC_001493.1 + 27609 0.68 0.622712
Target:  5'- cUCGAGGGgacccGCgCgGGCUCGGgaucGGCCc -3'
miRNA:   3'- cAGCUCCU-----UGaGgCCGAGCCa---CCGGc -5'
3098 5' -60 NC_001493.1 + 88178 0.68 0.612731
Target:  5'- cUUGGGGAACgcccgggguaCCGGCUggcgaaucacCGGUGGaCCGg -3'
miRNA:   3'- cAGCUCCUUGa---------GGCCGA----------GCCACC-GGC- -5'
3098 5' -60 NC_001493.1 + 42093 0.68 0.612731
Target:  5'- -cCGuGGAcucGC-CCGGCUCGGUcgugaccauGGCCa -3'
miRNA:   3'- caGCuCCU---UGaGGCCGAGCCA---------CCGGc -5'
3098 5' -60 NC_001493.1 + 56760 0.69 0.563167
Target:  5'- -aCGAGcGAuaaAUUCgGGUuaUCGGUGGCCGc -3'
miRNA:   3'- caGCUC-CU---UGAGgCCG--AGCCACCGGC- -5'
3098 5' -60 NC_001493.1 + 127717 0.7 0.514736
Target:  5'- cGUCGAGGGAggCgGGaauagaUGGUGGCCGg -3'
miRNA:   3'- -CAGCUCCUUgaGgCCga----GCCACCGGC- -5'
3098 5' -60 NC_001493.1 + 125581 0.7 0.499587
Target:  5'- cUCGAccggcuccaucaauaGGGcCUCCGcguaGCUCGGUGGCUGg -3'
miRNA:   3'- cAGCU---------------CCUuGAGGC----CGAGCCACCGGC- -5'
3098 5' -60 NC_001493.1 + 10027 0.7 0.499587
Target:  5'- cUCGAccggcuccaucaauaGGGcCUCCGcguaGCUCGGUGGCUGg -3'
miRNA:   3'- cAGCU---------------CCUuGAGGC----CGAGCCACCGGC- -5'
3098 5' -60 NC_001493.1 + 61496 0.71 0.459011
Target:  5'- gGUCGcGGGACUCCGGgccaaccugcCUCGGaucauagaUGGCCu -3'
miRNA:   3'- -CAGCuCCUUGAGGCC----------GAGCC--------ACCGGc -5'
3098 5' -60 NC_001493.1 + 88833 1.07 0.00152
Target:  5'- gGUCGAGGAACUCCGGCUCGGUGGCCGu -3'
miRNA:   3'- -CAGCUCCUUGAGGCCGAGCCACCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.