miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3099 5' -54.3 NC_001493.1 + 47232 0.66 0.947438
Target:  5'- gCGGCGGGgUggcacCGGUCAGGUCc---- -3'
miRNA:   3'- gGCCGCCCgGa----GCUAGUCUAGaaagu -5'
3099 5' -54.3 NC_001493.1 + 110356 0.66 0.947438
Target:  5'- uCCgGGCGcGGgCUCGAccuUCAGGUCagugUCGa -3'
miRNA:   3'- -GG-CCGC-CCgGAGCU---AGUCUAGaa--AGU- -5'
3099 5' -54.3 NC_001493.1 + 59929 0.66 0.938237
Target:  5'- aCCGGCcGGCCU-GAUCAGGaCggUUCc -3'
miRNA:   3'- -GGCCGcCCGGAgCUAGUCUaGa-AAGu -5'
3099 5' -54.3 NC_001493.1 + 46964 0.66 0.938237
Target:  5'- aUCGGCcuccgcauccGGGaUCUCGAUCAGcAUCUggCGg -3'
miRNA:   3'- -GGCCG----------CCC-GGAGCUAGUC-UAGAaaGU- -5'
3099 5' -54.3 NC_001493.1 + 128559 0.66 0.933272
Target:  5'- cUCGGCGaGCCguUCGAgaaUCGGGUCUcugUCAc -3'
miRNA:   3'- -GGCCGCcCGG--AGCU---AGUCUAGAa--AGU- -5'
3099 5' -54.3 NC_001493.1 + 13005 0.66 0.933272
Target:  5'- cUCGGCGaGCCguUCGAgaaUCGGGUCUcugUCAc -3'
miRNA:   3'- -GGCCGCcCGG--AGCU---AGUCUAGAa--AGU- -5'
3099 5' -54.3 NC_001493.1 + 111074 0.67 0.92261
Target:  5'- cCCGGUgaGGGCCaUCGAgccGAUCggUCGu -3'
miRNA:   3'- -GGCCG--CCCGG-AGCUaguCUAGaaAGU- -5'
3099 5' -54.3 NC_001493.1 + 53427 0.67 0.904784
Target:  5'- aCGGaguucGGCCUCGGUCccGAUCUUcUCAa -3'
miRNA:   3'- gGCCgc---CCGGAGCUAGu-CUAGAA-AGU- -5'
3099 5' -54.3 NC_001493.1 + 102469 0.67 0.904784
Target:  5'- -aGGUgGGGCCUCGG-CGGGUCggggggUCGc -3'
miRNA:   3'- ggCCG-CCCGGAGCUaGUCUAGaa----AGU- -5'
3099 5' -54.3 NC_001493.1 + 132329 0.68 0.891699
Target:  5'- cCCGGUGGGCCaucUCGAUguGAc------ -3'
miRNA:   3'- -GGCCGCCCGG---AGCUAguCUagaaagu -5'
3099 5' -54.3 NC_001493.1 + 16775 0.68 0.891699
Target:  5'- cCCGGUGGGCCaucUCGAUguGAc------ -3'
miRNA:   3'- -GGCCGCCCGG---AGCUAguCUagaaagu -5'
3099 5' -54.3 NC_001493.1 + 33335 0.68 0.870332
Target:  5'- cUCGGCGGGgacCCUgaUGAUCGGGUCg-UCGg -3'
miRNA:   3'- -GGCCGCCC---GGA--GCUAGUCUAGaaAGU- -5'
3099 5' -54.3 NC_001493.1 + 60340 0.68 0.862765
Target:  5'- gCGGCGGGCUUCGAUUucgAGAc------ -3'
miRNA:   3'- gGCCGCCCGGAGCUAG---UCUagaaagu -5'
3099 5' -54.3 NC_001493.1 + 37502 0.76 0.484346
Target:  5'- uUGGUGGGCCUCGAUCGGcugCUg--- -3'
miRNA:   3'- gGCCGCCCGGAGCUAGUCua-GAaagu -5'
3099 5' -54.3 NC_001493.1 + 90852 1.1 0.003229
Target:  5'- gCCGGCGGGCCUCGAUCAGAUCUUUCAu -3'
miRNA:   3'- -GGCCGCCCGGAGCUAGUCUAGAAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.