miRNA display CGI


Results 81 - 100 of 306 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 132315 0.67 0.387281
Target:  5'- -cCCAgCGGCgCggCCGGGGCGCacgcggucgcggggcGGGGGu -3'
miRNA:   3'- cuGGUgGCUGgG--GGCCCCGCG---------------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 33178 0.67 0.391109
Target:  5'- cGGCCGCgGggaagggGCCCgCGGGGaaggcggcCGCGGGGc -3'
miRNA:   3'- -CUGGUGgC-------UGGGgGCCCC--------GCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 25402 0.67 0.391109
Target:  5'- cGGCC-CCGAgCCCCgcccccgcccuggGGGGCGCGaccccggacuGGGa -3'
miRNA:   3'- -CUGGuGGCUgGGGG-------------CCCCGCGC----------CCCc -5'
30991 5' -67.8 NC_006560.1 + 14789 0.67 0.391878
Target:  5'- cGGgCACgGGCUCCguCGGGGgGCucGGGGGc -3'
miRNA:   3'- -CUgGUGgCUGGGG--GCCCCgCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 28545 0.67 0.391878
Target:  5'- cGCgCGCCG-CCCCUGGGGgccgccccgcgcCGCGGcGGa -3'
miRNA:   3'- cUG-GUGGCuGGGGGCCCC------------GCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 57862 0.67 0.391878
Target:  5'- gGGCgGCaggGGCUCCCGGGGCcccccGCGGGu- -3'
miRNA:   3'- -CUGgUGg--CUGGGGGCCCCG-----CGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 134953 0.67 0.391878
Target:  5'- -cCCACCGACCCgCCGGGuccgcacuGCGCGa--- -3'
miRNA:   3'- cuGGUGGCUGGG-GGCCC--------CGCGCcccc -5'
30991 5' -67.8 NC_006560.1 + 92883 0.67 0.391878
Target:  5'- cACCGCCcGCgCCCUGGaGCGCGGcGGcGg -3'
miRNA:   3'- cUGGUGGcUG-GGGGCCcCGCGCC-CC-C- -5'
30991 5' -67.8 NC_006560.1 + 139061 0.67 0.384236
Target:  5'- cGGCCcguGCCGGgCCCgGGGGCGCGc--- -3'
miRNA:   3'- -CUGG---UGGCUgGGGgCCCCGCGCcccc -5'
30991 5' -67.8 NC_006560.1 + 125030 0.67 0.384236
Target:  5'- -cCCACCGGCggCUGGuGGCGCGGcGGu -3'
miRNA:   3'- cuGGUGGCUGggGGCC-CCGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 93368 0.67 0.384236
Target:  5'- cGCCucCCGugCCgUCGGGGgG-GGGGGc -3'
miRNA:   3'- cUGGu-GGCugGG-GGCCCCgCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 10782 0.67 0.376694
Target:  5'- cGCCGCCaggaGCCCCCgcGGGGCcCGGGcGa -3'
miRNA:   3'- cUGGUGGc---UGGGGG--CCCCGcGCCC-Cc -5'
30991 5' -67.8 NC_006560.1 + 26834 0.67 0.376694
Target:  5'- --aCGCCGGggaCCCGGGGCGCGGc-- -3'
miRNA:   3'- cugGUGGCUgg-GGGCCCCGCGCCccc -5'
30991 5' -67.8 NC_006560.1 + 32890 0.67 0.376694
Target:  5'- aGGCCGCgGgggggcgcGCCCgCGGGGUagccGCcGGGGGc -3'
miRNA:   3'- -CUGGUGgC--------UGGGgGCCCCG----CG-CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 144109 0.67 0.376694
Target:  5'- -uCCGCCGGCCCcugccuggcuCCGGcGGCcGCGGcGGc -3'
miRNA:   3'- cuGGUGGCUGGG----------GGCC-CCG-CGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 15511 0.67 0.376694
Target:  5'- cGCCcCCGAgUCCCGGGGCcaGCcGGGu -3'
miRNA:   3'- cUGGuGGCUgGGGGCCCCG--CGcCCCc -5'
30991 5' -67.8 NC_006560.1 + 38097 0.67 0.383478
Target:  5'- uGCCGCgGGuuUCUGGGGCggcguuuGUGGGGGc -3'
miRNA:   3'- cUGGUGgCUggGGGCCCCG-------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 97381 0.67 0.383478
Target:  5'- cGGCgGCCGGCCgggggcgacCCCGGGGagGCGGccaccccGGGc -3'
miRNA:   3'- -CUGgUGGCUGG---------GGGCCCCg-CGCC-------CCC- -5'
30991 5' -67.8 NC_006560.1 + 149579 0.67 0.384236
Target:  5'- gGACCACCGACucaCCCCaGGacCGCaGGcGGGa -3'
miRNA:   3'- -CUGGUGGCUG---GGGGcCCc-GCG-CC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 50394 0.68 0.340506
Target:  5'- cGACgagGgCGACUaCCCGGGcGCgGCGGGGGc -3'
miRNA:   3'- -CUGg--UgGCUGG-GGGCCC-CG-CGCCCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.