miRNA display CGI


Results 101 - 120 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 36124 0.68 0.333577
Target:  5'- gGGCCGCCG-CCgCCGGGGUcgaGCcGGGc -3'
miRNA:   3'- -CUGGUGGCuGGgGGCCCCG---CGcCCCc -5'
30991 5' -67.8 NC_006560.1 + 32838 0.68 0.333577
Target:  5'- gGGCCACgCGggcggcgggcaGCCCCCcGGGCagaGGGGGc -3'
miRNA:   3'- -CUGGUG-GC-----------UGGGGGcCCCGcg-CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 5455 0.68 0.333577
Target:  5'- -uUCGCCG--CCCgGGGGCGCcGGGGc -3'
miRNA:   3'- cuGGUGGCugGGGgCCCCGCGcCCCC- -5'
30991 5' -67.8 NC_006560.1 + 1518 0.68 0.333577
Target:  5'- cGugCAUCGGgCCCCGGGcGCGCGcccGGc -3'
miRNA:   3'- -CugGUGGCUgGGGGCCC-CGCGCc--CCc -5'
30991 5' -67.8 NC_006560.1 + 83195 0.68 0.333577
Target:  5'- gGGCUGCCGggGCUgCCCGGGGCgccccccccgaaGCGGGcGGc -3'
miRNA:   3'- -CUGGUGGC--UGG-GGGCCCCG------------CGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 17465 0.68 0.33289
Target:  5'- -uCCAgC-ACCUCCGGGGUGaguccgcCGGGGGg -3'
miRNA:   3'- cuGGUgGcUGGGGGCCCCGC-------GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 15244 0.68 0.329469
Target:  5'- cGGCCggugcggucggggagGCgGACgCCgGGGGCGCGGucgcGGGa -3'
miRNA:   3'- -CUGG---------------UGgCUGgGGgCCCCGCGCC----CCC- -5'
30991 5' -67.8 NC_006560.1 + 127474 0.68 0.326752
Target:  5'- cGCCGCgCGcgagacgggcucGCCgCCCGcGGGCGCGGcGGa -3'
miRNA:   3'- cUGGUG-GC------------UGG-GGGC-CCCGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 99590 0.68 0.326752
Target:  5'- uAUCuCCGGCgcuuCCCCGGcGCgGCGGGGGg -3'
miRNA:   3'- cUGGuGGCUG----GGGGCCcCG-CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 140460 0.68 0.333577
Target:  5'- gGGCUugCGAUCgCgGcGGGC-CGGGGGg -3'
miRNA:   3'- -CUGGugGCUGGgGgC-CCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 26806 0.68 0.333577
Target:  5'- aGAgCGa-GACCgaCGGGGCGCGcGGGGg -3'
miRNA:   3'- -CUgGUggCUGGggGCCCCGCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 50394 0.68 0.340506
Target:  5'- cGACgagGgCGACUaCCCGGGcGCgGCGGGGGc -3'
miRNA:   3'- -CUGg--UgGCUGG-GGGCCC-CG-CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 31843 0.68 0.340506
Target:  5'- cGCCGCgCGACgCgCGGGGgGgccgaGGGGGg -3'
miRNA:   3'- cUGGUG-GCUGgGgGCCCCgCg----CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 26227 0.68 0.340506
Target:  5'- cGGCCGCCagGAaCCCCGGaGGCcggGCcggaGGGGGg -3'
miRNA:   3'- -CUGGUGG--CUgGGGGCC-CCG---CG----CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 70910 0.68 0.340506
Target:  5'- aGCCGCCG-CgaCCuGGGCGCcuGGGGGg -3'
miRNA:   3'- cUGGUGGCuGggGGcCCCGCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 46537 0.68 0.340506
Target:  5'- cGCC-CCGGCCCcaaacggaagCCGGGGCGCcguccGGGu -3'
miRNA:   3'- cUGGuGGCUGGG----------GGCCCCGCGc----CCCc -5'
30991 5' -67.8 NC_006560.1 + 18873 0.68 0.340506
Target:  5'- gGGCCGCCGccccGCCCgCCGuGGGCgGCGGa-- -3'
miRNA:   3'- -CUGGUGGC----UGGG-GGC-CCCG-CGCCccc -5'
30991 5' -67.8 NC_006560.1 + 59572 0.68 0.340506
Target:  5'- aGGCCACaccCUCCCGuGGGUGCcGGGcGGg -3'
miRNA:   3'- -CUGGUGgcuGGGGGC-CCCGCG-CCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 145143 0.68 0.336336
Target:  5'- uGGCCcCCGcCCCCCuggggGGGGCcGCacuccccgccucccuGGGGGg -3'
miRNA:   3'- -CUGGuGGCuGGGGG-----CCCCG-CG---------------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 74296 0.68 0.333577
Target:  5'- cGCCGCCGACCa-CGcGGCcgGCGGGGa -3'
miRNA:   3'- cUGGUGGCUGGggGCcCCG--CGCCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.