miRNA display CGI


Results 41 - 60 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 16203 0.74 0.138777
Target:  5'- cGGCCACCGGCggagccgggCCCGcGGGCccggcaucgucgagGCGGGGGg -3'
miRNA:   3'- -CUGGUGGCUGg--------GGGC-CCCG--------------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 120123 0.74 0.133317
Target:  5'- cGCC-CUGGgCCCCGGGGCGUGGuGGc -3'
miRNA:   3'- cUGGuGGCUgGGGGCCCCGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 5088 0.74 0.130198
Target:  5'- cGugCGgCGcGCCgCCCGGGGUcgGCGGGGGc -3'
miRNA:   3'- -CugGUgGC-UGG-GGGCCCCG--CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 108518 0.74 0.130198
Target:  5'- cGGCCGgCGGCgggCCCgGGGGCGCGucGGGGc -3'
miRNA:   3'- -CUGGUgGCUG---GGGgCCCCGCGC--CCCC- -5'
30991 5' -67.8 NC_006560.1 + 11577 0.74 0.136504
Target:  5'- cGACCuCCGccGCCUCgGGGGuCGCGGGGu -3'
miRNA:   3'- -CUGGuGGC--UGGGGgCCCC-GCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 55308 0.74 0.130198
Target:  5'- cACCuGCUGGCCCaCGGGGuCGCGGGGcGg -3'
miRNA:   3'- cUGG-UGGCUGGGgGCCCC-GCGCCCC-C- -5'
30991 5' -67.8 NC_006560.1 + 147895 0.74 0.136504
Target:  5'- aGACgGCgcaGACCUCgCGGGGCggggGCGGGGGa -3'
miRNA:   3'- -CUGgUGg--CUGGGG-GCCCCG----CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 50250 0.74 0.132374
Target:  5'- uGGCCGCCGcGCCUCCGGGcggccgggcucggcGCGCccccGGGGGu -3'
miRNA:   3'- -CUGGUGGC-UGGGGGCCC--------------CGCG----CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 11525 0.74 0.121241
Target:  5'- -gUCGcCCGACCCCCgccgGGGGuCGCGGGGu -3'
miRNA:   3'- cuGGU-GGCUGGGGG----CCCC-GCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 45793 0.74 0.132374
Target:  5'- -uCCGCCGgggccuuuugGCCCCCGGGGCGgagcacaggaagacCGGGGu -3'
miRNA:   3'- cuGGUGGC----------UGGGGGCCCCGC--------------GCCCCc -5'
30991 5' -67.8 NC_006560.1 + 64955 0.74 0.127146
Target:  5'- cGCCGCCGGcggccucguCCCCCucggcGGGGCcggccgccGCGGGGGg -3'
miRNA:   3'- cUGGUGGCU---------GGGGG-----CCCCG--------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32554 0.74 0.127146
Target:  5'- uGCgGCCc-CCCCCaGGGGgGCGGGGGc -3'
miRNA:   3'- cUGgUGGcuGGGGG-CCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 42539 0.74 0.133317
Target:  5'- aGCC-CCaGCgCCCCGGGGuCGCGcGGGGa -3'
miRNA:   3'- cUGGuGGcUG-GGGGCCCC-GCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 70709 0.74 0.136504
Target:  5'- cGCCACgGGCCCCCGGcGCGUGGccgaguucguccGGGa -3'
miRNA:   3'- cUGGUGgCUGGGGGCCcCGCGCC------------CCC- -5'
30991 5' -67.8 NC_006560.1 + 23437 0.73 0.153516
Target:  5'- cGCCGCCGaccgcggcgccGCCCCCGcGGCGgaggaGGGGGa -3'
miRNA:   3'- cUGGUGGC-----------UGGGGGCcCCGCg----CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 34939 0.73 0.149966
Target:  5'- gGGCCGcucCCGcGCCCCCGGGGCcCGGGcgccGGg -3'
miRNA:   3'- -CUGGU---GGC-UGGGGGCCCCGcGCCC----CC- -5'
30991 5' -67.8 NC_006560.1 + 8903 0.73 0.151377
Target:  5'- gGGCCAcgcguggucugucuuCCGGCg--CGGGGCGCGGGGGg -3'
miRNA:   3'- -CUGGU---------------GGCUGgggGCCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 45431 0.73 0.146492
Target:  5'- cGCgCACUGGCgCCCGGGcagccaucGCGUGGGGGu -3'
miRNA:   3'- cUG-GUGGCUGgGGGCCC--------CGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 65097 0.73 0.142755
Target:  5'- uGCgAUCGACaccauggCCCCGGGGCgggccGCGGGGGc -3'
miRNA:   3'- cUGgUGGCUG-------GGGGCCCCG-----CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 147187 0.73 0.143091
Target:  5'- -cCCGCCcccuCCCCCucccccgccGGaGGCGCGGGGGg -3'
miRNA:   3'- cuGGUGGcu--GGGGG---------CC-CCGCGCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.