miRNA display CGI


Results 61 - 80 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 85514 0.73 0.146492
Target:  5'- gGGCUGCUG-CCCgCgGGGGCGCuuGGGGGg -3'
miRNA:   3'- -CUGGUGGCuGGG-GgCCCCGCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 34939 0.73 0.149966
Target:  5'- gGGCCGcucCCGcGCCCCCGGGGCcCGGGcgccGGg -3'
miRNA:   3'- -CUGGU---GGC-UGGGGGCCCCGcGCCC----CC- -5'
30991 5' -67.8 NC_006560.1 + 35989 0.73 0.164625
Target:  5'- cGCCACCuucGCCCCCcccuccggaGGGG-GUGGGGGg -3'
miRNA:   3'- cUGGUGGc--UGGGGG---------CCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 51849 0.73 0.156775
Target:  5'- -cCCcCCGcGCCCCUGGGGCGCGGcgcguccgcgcucGGGc -3'
miRNA:   3'- cuGGuGGC-UGGGGGCCCCGCGCC-------------CCC- -5'
30991 5' -67.8 NC_006560.1 + 147187 0.73 0.143091
Target:  5'- -cCCGCCcccuCCCCCucccccgccGGaGGCGCGGGGGg -3'
miRNA:   3'- cuGGUGGcu--GGGGG---------CC-CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 45431 0.73 0.146492
Target:  5'- cGCgCACUGGCgCCCGGGcagccaucGCGUGGGGGu -3'
miRNA:   3'- cUG-GUGGCUGgGGGCCC--------CGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 8903 0.73 0.151377
Target:  5'- gGGCCAcgcguggucugucuuCCGGCg--CGGGGCGCGGGGGg -3'
miRNA:   3'- -CUGGU---------------GGCUGgggGCCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 12333 0.73 0.157141
Target:  5'- gGACCGgaGGCaCCUCGGGGCugGCGGGGcGg -3'
miRNA:   3'- -CUGGUggCUG-GGGGCCCCG--CGCCCC-C- -5'
30991 5' -67.8 NC_006560.1 + 80089 0.73 0.153516
Target:  5'- cACCACCGACaCCgCGGGG-GCGGGuGa -3'
miRNA:   3'- cUGGUGGCUG-GGgGCCCCgCGCCC-Cc -5'
30991 5' -67.8 NC_006560.1 + 3275 0.72 0.176452
Target:  5'- aGCCGCCGcgggggucggGCCCgCCGGGcGgGCGGGcGGu -3'
miRNA:   3'- cUGGUGGC----------UGGG-GGCCC-CgCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 35518 0.72 0.168486
Target:  5'- aGGCCGCgCcucccauuagGGCCCgCgCGGGGCGgGGGGGc -3'
miRNA:   3'- -CUGGUG-G----------CUGGG-G-GCCCCGCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 72334 0.72 0.189028
Target:  5'- -cCCGCCGcGCCUCCgucgGGGGUGUGGGGc -3'
miRNA:   3'- cuGGUGGC-UGGGGG----CCCCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 55476 0.72 0.189028
Target:  5'- -cCCGCCGGCgacgacggcguuUUCCGcGGGCGCGGGGu -3'
miRNA:   3'- cuGGUGGCUG------------GGGGC-CCCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 93599 0.72 0.189028
Target:  5'- gGGCgGCCGGgCCCgGaGGGCguuuucguGCGGGGGa -3'
miRNA:   3'- -CUGgUGGCUgGGGgC-CCCG--------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 35943 0.72 0.172428
Target:  5'- cGCCGCgCG-CCaaCGcGGGCGCGGGGGc -3'
miRNA:   3'- cUGGUG-GCuGGggGC-CCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 34376 0.72 0.168486
Target:  5'- -cCCGCCG--CCUCGGGGUcgccGCGGGGGg -3'
miRNA:   3'- cuGGUGGCugGGGGCCCCG----CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 36171 0.72 0.189028
Target:  5'- gGACCgGCgGACCCCCGguccGGGCuCGGGGc -3'
miRNA:   3'- -CUGG-UGgCUGGGGGC----CCCGcGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 14858 0.72 0.172428
Target:  5'- uGGCgGCCGGgCgCCgGGGGgGCGGGGa -3'
miRNA:   3'- -CUGgUGGCUgG-GGgCCCCgCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 27267 0.72 0.172428
Target:  5'- --gCGCCGGCCgCggccgcgggggCGGGGCGCGGGGc -3'
miRNA:   3'- cugGUGGCUGGgG-----------GCCCCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 26164 0.72 0.176452
Target:  5'- gGGCC-CCG-CCCCCGGGGaGCcuGGGGu -3'
miRNA:   3'- -CUGGuGGCuGGGGGCCCCgCGc-CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.