miRNA display CGI


Results 81 - 100 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 135967 0.72 0.168486
Target:  5'- uGAUCGCCGACaucaCCCGGcGCGCGGuGGcGg -3'
miRNA:   3'- -CUGGUGGCUGg---GGGCCcCGCGCC-CC-C- -5'
30991 5' -67.8 NC_006560.1 + 21701 0.72 0.176452
Target:  5'- cGCCGCCGGCcgcccccgcgCCCCGGGGCGgagcCGGccGGGc -3'
miRNA:   3'- cUGGUGGCUG----------GGGGCCCCGC----GCC--CCC- -5'
30991 5' -67.8 NC_006560.1 + 36171 0.72 0.189028
Target:  5'- gGACCgGCgGACCCCCGguccGGGCuCGGGGc -3'
miRNA:   3'- -CUGG-UGgCUGGGGGC----CCCGcGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 72334 0.72 0.189028
Target:  5'- -cCCGCCGcGCCUCCgucgGGGGUGUGGGGc -3'
miRNA:   3'- cuGGUGGC-UGGGGG----CCCCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 3318 0.72 0.18475
Target:  5'- cGCCGCgGGCCg--GGGGCGCGGGcGGg -3'
miRNA:   3'- cUGGUGgCUGGgggCCCCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 114324 0.72 0.18475
Target:  5'- -uCCGCCG-CCCCUgcaacccgcgGGGGCGCGcggccGGGGg -3'
miRNA:   3'- cuGGUGGCuGGGGG----------CCCCGCGC-----CCCC- -5'
30991 5' -67.8 NC_006560.1 + 55476 0.72 0.189028
Target:  5'- -cCCGCCGGCgacgacggcguuUUCCGcGGGCGCGGGGu -3'
miRNA:   3'- cuGGUGGCUG------------GGGGC-CCCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 45735 0.72 0.176452
Target:  5'- aGGCgCGCCGcgggcucgcGCCCCCGccagggguuGGCGUGGGGGg -3'
miRNA:   3'- -CUG-GUGGC---------UGGGGGCc--------CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 26164 0.72 0.176452
Target:  5'- gGGCC-CCG-CCCCCGGGGaGCcuGGGGu -3'
miRNA:   3'- -CUGGuGGCuGGGGGCCCCgCGc-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 22280 0.71 0.211739
Target:  5'- -cCCGCCGACCCCgGGcGGCGCGc--- -3'
miRNA:   3'- cuGGUGGCUGGGGgCC-CCGCGCcccc -5'
30991 5' -67.8 NC_006560.1 + 99739 0.71 0.221463
Target:  5'- cGCCGCCgGGgCCCCGacgacgcccGGGUGgGGGGGc -3'
miRNA:   3'- cUGGUGG-CUgGGGGC---------CCCGCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 97628 0.71 0.207016
Target:  5'- cGGCCACCGucgGCCgCCGGGugaGCGCGcgcaugcucGGGGa -3'
miRNA:   3'- -CUGGUGGC---UGGgGGCCC---CGCGC---------CCCC- -5'
30991 5' -67.8 NC_006560.1 + 103027 0.71 0.221463
Target:  5'- cGCCcggUCGACgCgCGGGGCGCGGGcGGc -3'
miRNA:   3'- cUGGu--GGCUGgGgGCCCCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 142708 0.71 0.221463
Target:  5'- cGGCCgGCCGcGgCCCCGaGGCGCccGGGGGg -3'
miRNA:   3'- -CUGG-UGGC-UgGGGGCcCCGCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32754 0.71 0.202385
Target:  5'- cGGCgCGCCGGCCggggucucggggUCCGaGGGCGaGGGGGa -3'
miRNA:   3'- -CUG-GUGGCUGG------------GGGC-CCCGCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 99781 0.71 0.211739
Target:  5'- cGCCGCCGggGCCCCaaaCGGGGCccCGGGGc -3'
miRNA:   3'- cUGGUGGC--UGGGG---GCCCCGc-GCCCCc -5'
30991 5' -67.8 NC_006560.1 + 128273 0.71 0.197844
Target:  5'- uGCgCGCCGaggggggggaggGCCCCgGGGGCGCGcccgcGGGGc -3'
miRNA:   3'- cUG-GUGGC------------UGGGGgCCCCGCGC-----CCCC- -5'
30991 5' -67.8 NC_006560.1 + 98842 0.71 0.193392
Target:  5'- -cCCACCcccuCCCCCGGGG-GaGGGGGa -3'
miRNA:   3'- cuGGUGGcu--GGGGGCCCCgCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 103104 0.71 0.197844
Target:  5'- -cCCGCgGACCCggCGGcGGaCGCGGGGGc -3'
miRNA:   3'- cuGGUGgCUGGGg-GCC-CC-GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 129721 0.71 0.211739
Target:  5'- aGAgCACCcaGACCuuCCCGGGGUGgGGcGGGu -3'
miRNA:   3'- -CUgGUGG--CUGG--GGGCCCCGCgCC-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.