Results 101 - 120 of 306 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 103027 | 0.71 | 0.221463 |
Target: 5'- cGCCcggUCGACgCgCGGGGCGCGGGcGGc -3' miRNA: 3'- cUGGu--GGCUGgGgGCCCCGCGCCC-CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 99739 | 0.71 | 0.221463 |
Target: 5'- cGCCGCCgGGgCCCCGacgacgcccGGGUGgGGGGGc -3' miRNA: 3'- cUGGUGG-CUgGGGGC---------CCCGCgCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 54880 | 0.71 | 0.221463 |
Target: 5'- aGCCGCgaGacGCCCCCGGGG-GCcaGGGGGc -3' miRNA: 3'- cUGGUGg-C--UGGGGGCCCCgCG--CCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 44311 | 0.71 | 0.221463 |
Target: 5'- cGAUgGCCGGucUUCUCGGGGCGCucugcggcuGGGGGg -3' miRNA: 3'- -CUGgUGGCU--GGGGGCCCCGCG---------CCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 22280 | 0.71 | 0.211739 |
Target: 5'- -cCCGCCGACCCCgGGcGGCGCGc--- -3' miRNA: 3'- cuGGUGGCUGGGGgCC-CCGCGCcccc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 99781 | 0.71 | 0.211739 |
Target: 5'- cGCCGCCGggGCCCCaaaCGGGGCccCGGGGc -3' miRNA: 3'- cUGGUGGC--UGGGG---GCCCCGc-GCCCCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 149832 | 0.71 | 0.211739 |
Target: 5'- cGGCCuCgCGGCCCCCGGc-CGCGGGcGGg -3' miRNA: 3'- -CUGGuG-GCUGGGGGCCccGCGCCC-CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 26711 | 0.71 | 0.216555 |
Target: 5'- cGCCGCgGGCgCgCCGGGGUGCGaaccuGGGGc -3' miRNA: 3'- cUGGUGgCUGgG-GGCCCCGCGC-----CCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 32578 | 0.71 | 0.216555 |
Target: 5'- nGCCAgaGcCCCCCgcagggacacGGGGgGCGGGGGc -3' miRNA: 3'- cUGGUggCuGGGGG----------CCCCgCGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 57963 | 0.71 | 0.216555 |
Target: 5'- cGGCgCGCCuuauaGCCCCCGcucGGCGCGGGcGGa -3' miRNA: 3'- -CUG-GUGGc----UGGGGGCc--CCGCGCCC-CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 144191 | 0.7 | 0.257958 |
Target: 5'- uGACC-CCGACCCCCGGgccGGCGCccgccucccugccGGcGGc -3' miRNA: 3'- -CUGGuGGCUGGGGGCC---CCGCG-------------CC-CCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 39373 | 0.7 | 0.258521 |
Target: 5'- cGGCCccggcGCCggGACCCCCGggccgaacucGGGCuCGGGGGc -3' miRNA: 3'- -CUGG-----UGG--CUGGGGGC----------CCCGcGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 11307 | 0.7 | 0.235191 |
Target: 5'- gGGCCGCCucguucacggccgaGAUgCUCGGGGCGaccggcgaGGGGGg -3' miRNA: 3'- -CUGGUGG--------------CUGgGGGCCCCGCg-------CCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 904 | 0.7 | 0.23676 |
Target: 5'- gGGCCGCCGGCCgcuCCCGGcGGUGgaggccuaGGGGa -3' miRNA: 3'- -CUGGUGGCUGG---GGGCC-CCGCg-------CCCCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 71101 | 0.7 | 0.231565 |
Target: 5'- cGGCC-CgGACCCCCcccgggaccuGGaGGUGCGGGaGGa -3' miRNA: 3'- -CUGGuGgCUGGGGG----------CC-CCGCGCCC-CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 66012 | 0.7 | 0.226466 |
Target: 5'- gGACCGCggguCGGCCgCCaGGGcCGCGaGGGGg -3' miRNA: 3'- -CUGGUG----GCUGGgGGcCCC-GCGC-CCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 50085 | 0.7 | 0.226466 |
Target: 5'- cGCCGCCGGCCCcgCCGGcGGCaCGGGc- -3' miRNA: 3'- cUGGUGGCUGGG--GGCC-CCGcGCCCcc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 11726 | 0.7 | 0.226466 |
Target: 5'- -uCgGCCGGCCCCa--GGCGCGGGGc -3' miRNA: 3'- cuGgUGGCUGGGGgccCCGCGCCCCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 141609 | 0.7 | 0.258521 |
Target: 5'- cGCCGCgGcCCCgCCGGGGgaggaaGgGGGGGg -3' miRNA: 3'- cUGGUGgCuGGG-GGCCCCg-----CgCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 32416 | 0.7 | 0.252932 |
Target: 5'- gGGCCgagGCCcGCCCagGGGGC-CGGGGGg -3' miRNA: 3'- -CUGG---UGGcUGGGggCCCCGcGCCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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