Results 121 - 140 of 306 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 33616 | 0.7 | 0.247443 |
Target: 5'- aGACCACCagGAgCaggGGGGgGCGGGGGg -3' miRNA: 3'- -CUGGUGG--CUgGgggCCCCgCGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 71101 | 0.7 | 0.231565 |
Target: 5'- cGGCC-CgGACCCCCcccgggaccuGGaGGUGCGGGaGGa -3' miRNA: 3'- -CUGGuGgCUGGGGG----------CC-CCGCGCCC-CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 17715 | 0.7 | 0.244197 |
Target: 5'- cGGCCggaaaACCGACgCCCCGGGGCGgGuuauaaaaggucuccGGuGGg -3' miRNA: 3'- -CUGG-----UGGCUG-GGGGCCCCGCgC---------------CC-CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 32416 | 0.7 | 0.252932 |
Target: 5'- gGGCCgagGCCcGCCCagGGGGC-CGGGGGg -3' miRNA: 3'- -CUGG---UGGcUGGGggCCCCGcGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 904 | 0.7 | 0.23676 |
Target: 5'- gGGCCGCCGGCCgcuCCCGGcGGUGgaggccuaGGGGa -3' miRNA: 3'- -CUGGUGGCUGG---GGGCC-CCGCg-------CCCCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 69439 | 0.7 | 0.247443 |
Target: 5'- cGGCuCugCGAggCCgCGGGGCugGCGGGGGg -3' miRNA: 3'- -CUG-GugGCUg-GGgGCCCCG--CGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 50085 | 0.7 | 0.226466 |
Target: 5'- cGCCGCCGGCCCcgCCGGcGGCaCGGGc- -3' miRNA: 3'- cUGGUGGCUGGG--GGCC-CCGcGCCCcc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 54749 | 0.7 | 0.231565 |
Target: 5'- aGCCAcCCGGCCCCgCaGGGCGCGaGGc -3' miRNA: 3'- cUGGU-GGCUGGGG-GcCCCGCGCcCCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 81511 | 0.7 | 0.242052 |
Target: 5'- cGACC-UCGGCCCUCuGGGUGCGGuGGcGg -3' miRNA: 3'- -CUGGuGGCUGGGGGcCCCGCGCC-CC-C- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 23359 | 0.7 | 0.246899 |
Target: 5'- cGCCGCCGccGCCCCCGGccucgccggcuacGGCGCcGcGGGc -3' miRNA: 3'- cUGGUGGC--UGGGGGCC-------------CCGCGcC-CCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 39373 | 0.7 | 0.258521 |
Target: 5'- cGGCCccggcGCCggGACCCCCGggccgaacucGGGCuCGGGGGc -3' miRNA: 3'- -CUGG-----UGG--CUGGGGGC----------CCCGcGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 147934 | 0.7 | 0.247443 |
Target: 5'- gGGCC-CgCGGCCCCCGGGaG-GCGGGcccGGg -3' miRNA: 3'- -CUGGuG-GCUGGGGGCCC-CgCGCCC---CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 75961 | 0.7 | 0.247443 |
Target: 5'- uGGCCgcgcugaggGCCGACgUCCaccGGGCGCuGGGGGg -3' miRNA: 3'- -CUGG---------UGGCUGgGGGc--CCCGCG-CCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 14396 | 0.69 | 0.269418 |
Target: 5'- cGACCgACCGAUucggaugaccgcaCCCCGGGGCGaggcguugucUGGGcGGc -3' miRNA: 3'- -CUGG-UGGCUG-------------GGGGCCCCGC----------GCCC-CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 138568 | 0.69 | 0.264211 |
Target: 5'- -cCCGCCGuCuCCCCGGcGaGCGCGGagacGGGg -3' miRNA: 3'- cuGGUGGCuG-GGGGCC-C-CGCGCC----CCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 132020 | 0.69 | 0.275301 |
Target: 5'- cGACC-CCGgagacacGCCCCCGGccgccgcgcuGCGCGGcGGGg -3' miRNA: 3'- -CUGGuGGC-------UGGGGGCCc---------CGCGCC-CCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 39600 | 0.69 | 0.264211 |
Target: 5'- gGGCgCGCCGGCCCgCGGaGcGcCGCGGcGGGc -3' miRNA: 3'- -CUG-GUGGCUGGGgGCC-C-C-GCGCC-CCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 34320 | 0.69 | 0.264211 |
Target: 5'- gGGCCGCCGcCCCCCGGuaCGCcuGGGu -3' miRNA: 3'- -CUGGUGGCuGGGGGCCccGCGccCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 40467 | 0.69 | 0.263637 |
Target: 5'- cGACCGCCGugcugacgaucaGCCCCUGGcucgccaGGCGCaGGaGGa -3' miRNA: 3'- -CUGGUGGC------------UGGGGGCC-------CCGCGcCC-CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 65028 | 0.69 | 0.275894 |
Target: 5'- gGACUGaCGGCCCggagcggggCC-GGGCGCGGGGGc -3' miRNA: 3'- -CUGGUgGCUGGG---------GGcCCCGCGCCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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