Results 81 - 100 of 306 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 1924 | 0.72 | 0.178906 |
Target: 5'- cGGCCGCCGGcucgccguccggguCCCaguCCGGGGUcgcgccccccaggGCGGGGGc -3' miRNA: 3'- -CUGGUGGCU--------------GGG---GGCCCCG-------------CGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 118426 | 0.72 | 0.180559 |
Target: 5'- cGGCUACCGcGCCCCgGGGGCGaGGuccuGGGc -3' miRNA: 3'- -CUGGUGGC-UGGGGgCCCCGCgCC----CCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 30493 | 0.72 | 0.184327 |
Target: 5'- cGCC-CCGGCCCCCcgcgccuccggcgGGGGagggggaggggGCGGGGGg -3' miRNA: 3'- cUGGuGGCUGGGGG-------------CCCCg----------CGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 3318 | 0.72 | 0.18475 |
Target: 5'- cGCCGCgGGCCg--GGGGCGCGGGcGGg -3' miRNA: 3'- cUGGUGgCUGGgggCCCCGCGCCC-CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 114324 | 0.72 | 0.18475 |
Target: 5'- -uCCGCCG-CCCCUgcaacccgcgGGGGCGCGcggccGGGGg -3' miRNA: 3'- cuGGUGGCuGGGGG----------CCCCGCGC-----CCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 55476 | 0.72 | 0.189028 |
Target: 5'- -cCCGCCGGCgacgacggcguuUUCCGcGGGCGCGGGGu -3' miRNA: 3'- cuGGUGGCUG------------GGGGC-CCCGCGCCCCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 93599 | 0.72 | 0.189028 |
Target: 5'- gGGCgGCCGGgCCCgGaGGGCguuuucguGCGGGGGa -3' miRNA: 3'- -CUGgUGGCUgGGGgC-CCCG--------CGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 36171 | 0.72 | 0.189028 |
Target: 5'- gGACCgGCgGACCCCCGguccGGGCuCGGGGc -3' miRNA: 3'- -CUGG-UGgCUGGGGGC----CCCGcGCCCCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 72334 | 0.72 | 0.189028 |
Target: 5'- -cCCGCCGcGCCUCCgucgGGGGUGUGGGGc -3' miRNA: 3'- cuGGUGGC-UGGGGG----CCCCGCGCCCCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 98842 | 0.71 | 0.193392 |
Target: 5'- -cCCACCcccuCCCCCGGGG-GaGGGGGa -3' miRNA: 3'- cuGGUGGcu--GGGGGCCCCgCgCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 34506 | 0.71 | 0.197844 |
Target: 5'- cGGCUccggagGCCGGCa--CGGGGCGCGcGGGGg -3' miRNA: 3'- -CUGG------UGGCUGgggGCCCCGCGC-CCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 128273 | 0.71 | 0.197844 |
Target: 5'- uGCgCGCCGaggggggggaggGCCCCgGGGGCGCGcccgcGGGGc -3' miRNA: 3'- cUG-GUGGC------------UGGGGgCCCCGCGC-----CCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 103104 | 0.71 | 0.197844 |
Target: 5'- -cCCGCgGACCCggCGGcGGaCGCGGGGGc -3' miRNA: 3'- cuGGUGgCUGGGg-GCC-CC-GCGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 32754 | 0.71 | 0.202385 |
Target: 5'- cGGCgCGCCGGCCggggucucggggUCCGaGGGCGaGGGGGa -3' miRNA: 3'- -CUG-GUGGCUGG------------GGGC-CCCGCgCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 97628 | 0.71 | 0.207016 |
Target: 5'- cGGCCACCGucgGCCgCCGGGugaGCGCGcgcaugcucGGGGa -3' miRNA: 3'- -CUGGUGGC---UGGgGGCCC---CGCGC---------CCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 124495 | 0.71 | 0.211263 |
Target: 5'- cGCCGCCGACCCCCGGccccucauGGCGUucuucgaGGcGGc -3' miRNA: 3'- cUGGUGGCUGGGGGCC--------CCGCG-------CC-CCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 129721 | 0.71 | 0.211739 |
Target: 5'- aGAgCACCcaGACCuuCCCGGGGUGgGGcGGGu -3' miRNA: 3'- -CUgGUGG--CUGG--GGGCCCCGCgCC-CCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 22280 | 0.71 | 0.211739 |
Target: 5'- -cCCGCCGACCCCgGGcGGCGCGc--- -3' miRNA: 3'- cuGGUGGCUGGGGgCC-CCGCGCcccc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 142347 | 0.71 | 0.211739 |
Target: 5'- gGGCC-CCGcgcgcGCCUCgGGGGC-CGGGGGc -3' miRNA: 3'- -CUGGuGGC-----UGGGGgCCCCGcGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 99781 | 0.71 | 0.211739 |
Target: 5'- cGCCGCCGggGCCCCaaaCGGGGCccCGGGGc -3' miRNA: 3'- cUGGUGGC--UGGGG---GCCCCGc-GCCCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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