miRNA display CGI


Results 101 - 120 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 142347 0.71 0.211739
Target:  5'- gGGCC-CCGcgcgcGCCUCgGGGGC-CGGGGGc -3'
miRNA:   3'- -CUGGuGGC-----UGGGGgCCCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32578 0.71 0.216555
Target:  5'- nGCCAgaGcCCCCCgcagggacacGGGGgGCGGGGGc -3'
miRNA:   3'- cUGGUggCuGGGGG----------CCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 26711 0.71 0.216555
Target:  5'- cGCCGCgGGCgCgCCGGGGUGCGaaccuGGGGc -3'
miRNA:   3'- cUGGUGgCUGgG-GGCCCCGCGC-----CCCC- -5'
30991 5' -67.8 NC_006560.1 + 131665 0.71 0.216555
Target:  5'- -gUCGCCGGCgaggCCCUGGcGG-GCGGGGGg -3'
miRNA:   3'- cuGGUGGCUG----GGGGCC-CCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 57963 0.71 0.216555
Target:  5'- cGGCgCGCCuuauaGCCCCCGcucGGCGCGGGcGGa -3'
miRNA:   3'- -CUG-GUGGc----UGGGGGCc--CCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 44311 0.71 0.221463
Target:  5'- cGAUgGCCGGucUUCUCGGGGCGCucugcggcuGGGGGg -3'
miRNA:   3'- -CUGgUGGCU--GGGGGCCCCGCG---------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 142708 0.71 0.221463
Target:  5'- cGGCCgGCCGcGgCCCCGaGGCGCccGGGGGg -3'
miRNA:   3'- -CUGG-UGGC-UgGGGGCcCCGCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 103027 0.71 0.221463
Target:  5'- cGCCcggUCGACgCgCGGGGCGCGGGcGGc -3'
miRNA:   3'- cUGGu--GGCUGgGgGCCCCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 99739 0.71 0.221463
Target:  5'- cGCCGCCgGGgCCCCGacgacgcccGGGUGgGGGGGc -3'
miRNA:   3'- cUGGUGG-CUgGGGGC---------CCCGCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 54880 0.71 0.221463
Target:  5'- aGCCGCgaGacGCCCCCGGGG-GCcaGGGGGc -3'
miRNA:   3'- cUGGUGg-C--UGGGGGCCCCgCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 11726 0.7 0.226466
Target:  5'- -uCgGCCGGCCCCa--GGCGCGGGGc -3'
miRNA:   3'- cuGgUGGCUGGGGgccCCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 66012 0.7 0.226466
Target:  5'- gGACCGCggguCGGCCgCCaGGGcCGCGaGGGGg -3'
miRNA:   3'- -CUGGUG----GCUGGgGGcCCC-GCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 50085 0.7 0.226466
Target:  5'- cGCCGCCGGCCCcgCCGGcGGCaCGGGc- -3'
miRNA:   3'- cUGGUGGCUGGG--GGCC-CCGcGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 10470 0.7 0.231565
Target:  5'- gGGCCAC--GCCgCCuCGGGGCccgggGCGGGGGc -3'
miRNA:   3'- -CUGGUGgcUGG-GG-GCCCCG-----CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 71101 0.7 0.231565
Target:  5'- cGGCC-CgGACCCCCcccgggaccuGGaGGUGCGGGaGGa -3'
miRNA:   3'- -CUGGuGgCUGGGGG----------CC-CCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 54749 0.7 0.231565
Target:  5'- aGCCAcCCGGCCCCgCaGGGCGCGaGGc -3'
miRNA:   3'- cUGGU-GGCUGGGG-GcCCCGCGCcCCc -5'
30991 5' -67.8 NC_006560.1 + 11307 0.7 0.235191
Target:  5'- gGGCCGCCucguucacggccgaGAUgCUCGGGGCGaccggcgaGGGGGg -3'
miRNA:   3'- -CUGGUGG--------------CUGgGGGCCCCGCg-------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 904 0.7 0.23676
Target:  5'- gGGCCGCCGGCCgcuCCCGGcGGUGgaggccuaGGGGa -3'
miRNA:   3'- -CUGGUGGCUGG---GGGCC-CCGCg-------CCCCc -5'
30991 5' -67.8 NC_006560.1 + 126782 0.7 0.242052
Target:  5'- aGGCaCACCagGACCCCgGGGGCggacaGCGGGa- -3'
miRNA:   3'- -CUG-GUGG--CUGGGGgCCCCG-----CGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 81511 0.7 0.242052
Target:  5'- cGACC-UCGGCCCUCuGGGUGCGGuGGcGg -3'
miRNA:   3'- -CUGGuGGCUGGGGGcCCCGCGCC-CC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.