miRNA display CGI


Results 121 - 140 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 126782 0.7 0.242052
Target:  5'- aGGCaCACCagGACCCCgGGGGCggacaGCGGGa- -3'
miRNA:   3'- -CUG-GUGG--CUGGGGgCCCCG-----CGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 17715 0.7 0.244197
Target:  5'- cGGCCggaaaACCGACgCCCCGGGGCGgGuuauaaaaggucuccGGuGGg -3'
miRNA:   3'- -CUGG-----UGGCUG-GGGGCCCCGCgC---------------CC-CC- -5'
30991 5' -67.8 NC_006560.1 + 23359 0.7 0.246899
Target:  5'- cGCCGCCGccGCCCCCGGccucgccggcuacGGCGCcGcGGGc -3'
miRNA:   3'- cUGGUGGC--UGGGGGCC-------------CCGCGcC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 75961 0.7 0.247443
Target:  5'- uGGCCgcgcugaggGCCGACgUCCaccGGGCGCuGGGGGg -3'
miRNA:   3'- -CUGG---------UGGCUGgGGGc--CCCGCG-CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 69439 0.7 0.247443
Target:  5'- cGGCuCugCGAggCCgCGGGGCugGCGGGGGg -3'
miRNA:   3'- -CUG-GugGCUg-GGgGCCCCG--CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 33616 0.7 0.247443
Target:  5'- aGACCACCagGAgCaggGGGGgGCGGGGGg -3'
miRNA:   3'- -CUGGUGG--CUgGgggCCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 147934 0.7 0.247443
Target:  5'- gGGCC-CgCGGCCCCCGGGaG-GCGGGcccGGg -3'
miRNA:   3'- -CUGGuG-GCUGGGGGCCC-CgCGCCC---CC- -5'
30991 5' -67.8 NC_006560.1 + 110255 0.7 0.251275
Target:  5'- -cCCGCUGGCCCCCucgaccuucuGGGCGCugucccucugguacGGGGGc -3'
miRNA:   3'- cuGGUGGCUGGGGGc---------CCCGCG--------------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32416 0.7 0.252932
Target:  5'- gGGCCgagGCCcGCCCagGGGGC-CGGGGGg -3'
miRNA:   3'- -CUGG---UGGcUGGGggCCCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 99285 0.7 0.252932
Target:  5'- gGGCCGgCGGCUggggUCgggggagguggUGGGGCGCGGGGGc -3'
miRNA:   3'- -CUGGUgGCUGG----GG-----------GCCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 144191 0.7 0.257958
Target:  5'- uGACC-CCGACCCCCGGgccGGCGCccgccucccugccGGcGGc -3'
miRNA:   3'- -CUGGuGGCUGGGGGCC---CCGCG-------------CC-CCc -5'
30991 5' -67.8 NC_006560.1 + 39373 0.7 0.258521
Target:  5'- cGGCCccggcGCCggGACCCCCGggccgaacucGGGCuCGGGGGc -3'
miRNA:   3'- -CUGG-----UGG--CUGGGGGC----------CCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 141609 0.7 0.258521
Target:  5'- cGCCGCgGcCCCgCCGGGGgaggaaGgGGGGGg -3'
miRNA:   3'- cUGGUGgCuGGG-GGCCCCg-----CgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 40467 0.69 0.263637
Target:  5'- cGACCGCCGugcugacgaucaGCCCCUGGcucgccaGGCGCaGGaGGa -3'
miRNA:   3'- -CUGGUGGC------------UGGGGGCC-------CCGCGcCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 138568 0.69 0.264211
Target:  5'- -cCCGCCGuCuCCCCGGcGaGCGCGGagacGGGg -3'
miRNA:   3'- cuGGUGGCuG-GGGGCC-C-CGCGCC----CCC- -5'
30991 5' -67.8 NC_006560.1 + 106326 0.69 0.264211
Target:  5'- uGGCUcuGCgCGGCCCCgCGGGGUGCGagccGGGc -3'
miRNA:   3'- -CUGG--UG-GCUGGGG-GCCCCGCGCc---CCC- -5'
30991 5' -67.8 NC_006560.1 + 146341 0.69 0.264211
Target:  5'- -uCC-UCGGCCCCCgcucGGcGGgGCGGGGGc -3'
miRNA:   3'- cuGGuGGCUGGGGG----CC-CCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 34320 0.69 0.264211
Target:  5'- gGGCCGCCGcCCCCCGGuaCGCcuGGGu -3'
miRNA:   3'- -CUGGUGGCuGGGGGCCccGCGccCCC- -5'
30991 5' -67.8 NC_006560.1 + 39600 0.69 0.264211
Target:  5'- gGGCgCGCCGGCCCgCGGaGcGcCGCGGcGGGc -3'
miRNA:   3'- -CUG-GUGGCUGGGgGCC-C-C-GCGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 14396 0.69 0.269418
Target:  5'- cGACCgACCGAUucggaugaccgcaCCCCGGGGCGaggcguugucUGGGcGGc -3'
miRNA:   3'- -CUGG-UGGCUG-------------GGGGCCCCGC----------GCCC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.