miRNA display CGI


Results 81 - 100 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 105122 0.67 0.369252
Target:  5'- gGACCGCUacugGGcCCCCCGGGucgacGCGUGGuaccGGGa -3'
miRNA:   3'- -CUGGUGG----CU-GGGGGCCC-----CGCGCC----CCC- -5'
30991 5' -67.8 NC_006560.1 + 148653 0.67 0.369252
Target:  5'- cGGCCggagACgCGGCCCaaauaCGGGGCGCcguGGGcGGc -3'
miRNA:   3'- -CUGG----UG-GCUGGGg----GCCCCGCG---CCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 33490 0.67 0.36704
Target:  5'- gGGCCGCCGgcagggaggcgggcGCCggCCCGGGG-GuCGGGGu -3'
miRNA:   3'- -CUGGUGGC--------------UGG--GGGCCCCgC-GCCCCc -5'
30991 5' -67.8 NC_006560.1 + 122763 0.67 0.364836
Target:  5'- cACCACCcucGAggUCCCCGGGGCccggagcuucggcggGUccGGGGGg -3'
miRNA:   3'- cUGGUGG---CU--GGGGGCCCCG---------------CG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 48956 0.67 0.361912
Target:  5'- cGGCCACCGAggagCCCGGGGcCGCGcugacGGcGGc -3'
miRNA:   3'- -CUGGUGGCUgg--GGGCCCC-GCGC-----CC-CC- -5'
30991 5' -67.8 NC_006560.1 + 74032 0.67 0.361912
Target:  5'- cGCgGCCGACCUgCUGcGGGagcugcugcaGCGGGGGu -3'
miRNA:   3'- cUGgUGGCUGGG-GGC-CCCg---------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 112481 0.67 0.361912
Target:  5'- uGCCccuguguCCGACCgcguUCCGGGacGCGCGGGGc -3'
miRNA:   3'- cUGGu------GGCUGG----GGGCCC--CGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 142422 0.67 0.361912
Target:  5'- gGACC-CCGGgCCCCGccgcccGGCGCGGcGGc -3'
miRNA:   3'- -CUGGuGGCUgGGGGCc-----CCGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 50198 0.67 0.361912
Target:  5'- cGGCC-CCGgacGCCCCCGGGcG-GCGGcGGc -3'
miRNA:   3'- -CUGGuGGC---UGGGGGCCC-CgCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 147034 0.67 0.354674
Target:  5'- nGGCC-CCGAgaCggCCGGGGgGCGGcGGGg -3'
miRNA:   3'- -CUGGuGGCUggG--GGCCCCgCGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 27832 0.67 0.354674
Target:  5'- cGCgGCCGGgggUgCCgGGGGUGCcGGGGGu -3'
miRNA:   3'- cUGgUGGCU---GgGGgCCCCGCG-CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 17670 0.67 0.354674
Target:  5'- cGGCCucgucCCgGGCgCCgUGGGGCcCGGGGGg -3'
miRNA:   3'- -CUGGu----GG-CUG-GGgGCCCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 137230 0.67 0.354674
Target:  5'- cGACUucaaGACgCUgGGGGCGCGGGcGGc -3'
miRNA:   3'- -CUGGugg-CUGgGGgCCCCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 33804 0.67 0.347538
Target:  5'- -gUCGCgGGCgCggaCGGGGgGCGGGGGu -3'
miRNA:   3'- cuGGUGgCUGgGg--GCCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 118016 0.67 0.347538
Target:  5'- aGGCCGCgGcGCaCCUggcggCGGGGCucgGCGGGGGc -3'
miRNA:   3'- -CUGGUGgC-UG-GGG-----GCCCCG---CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 52512 0.67 0.347538
Target:  5'- cGGCCGCggCGGagUCCCUGGcGGagGCGGGGGc -3'
miRNA:   3'- -CUGGUG--GCU--GGGGGCC-CCg-CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 62352 0.67 0.347538
Target:  5'- --gUACCG-CUCCgggucggggaCGGGGuCGCGGGGGg -3'
miRNA:   3'- cugGUGGCuGGGG----------GCCCC-GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 144944 0.67 0.347538
Target:  5'- gGACC-CCGAgaCCCCGGccGGCGCGccGGGc -3'
miRNA:   3'- -CUGGuGGCUg-GGGGCC--CCGCGCc-CCC- -5'
30991 5' -67.8 NC_006560.1 + 9842 0.67 0.345417
Target:  5'- aGGCCGggcCUGGCCUCCauggcggcguccguGGGGCacCGGGGGg -3'
miRNA:   3'- -CUGGU---GGCUGGGGG--------------CCCCGc-GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 50394 0.68 0.340506
Target:  5'- cGACgagGgCGACUaCCCGGGcGCgGCGGGGGc -3'
miRNA:   3'- -CUGg--UgGCUGG-GGGCCC-CG-CGCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.