miRNA display CGI


Results 61 - 80 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 21701 0.72 0.176452
Target:  5'- cGCCGCCGGCcgcccccgcgCCCCGGGGCGgagcCGGccGGGc -3'
miRNA:   3'- cUGGUGGCUG----------GGGGCCCCGC----GCC--CCC- -5'
30991 5' -67.8 NC_006560.1 + 21973 0.69 0.27828
Target:  5'- cGACCguGCCGACCaugccgcgcgcuccgCUCGGcGGCGCGGGc- -3'
miRNA:   3'- -CUGG--UGGCUGG---------------GGGCC-CCGCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 22280 0.71 0.211739
Target:  5'- -cCCGCCGACCCCgGGcGGCGCGc--- -3'
miRNA:   3'- cuGGUGGCUGGGGgCC-CCGCGCcccc -5'
30991 5' -67.8 NC_006560.1 + 22837 0.73 0.146492
Target:  5'- aGCCcCCG-CCCCCGGGGCGCGugcucuacGGcGGc -3'
miRNA:   3'- cUGGuGGCuGGGGGCCCCGCGC--------CC-CC- -5'
30991 5' -67.8 NC_006560.1 + 23359 0.7 0.246899
Target:  5'- cGCCGCCGccGCCCCCGGccucgccggcuacGGCGCcGcGGGc -3'
miRNA:   3'- cUGGUGGC--UGGGGGCC-------------CCGCGcC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 23437 0.73 0.153516
Target:  5'- cGCCGCCGaccgcggcgccGCCCCCGcGGCGgaggaGGGGGa -3'
miRNA:   3'- cUGGUGGC-----------UGGGGGCcCCGCg----CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 24917 0.66 0.448039
Target:  5'- cGCCGCCGccGCgCCUGGGcCGCGGcGGc -3'
miRNA:   3'- cUGGUGGC--UGgGGGCCCcGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 25402 0.67 0.391109
Target:  5'- cGGCC-CCGAgCCCCgcccccgcccuggGGGGCGCGaccccggacuGGGa -3'
miRNA:   3'- -CUGGuGGCUgGGGG-------------CCCCGCGC----------CCCc -5'
30991 5' -67.8 NC_006560.1 + 25895 0.66 0.431532
Target:  5'- gGGCCGCgCG-CCUCCgauGGGGCGCGcgcacGGGc -3'
miRNA:   3'- -CUGGUG-GCuGGGGG---CCCCGCGCc----CCC- -5'
30991 5' -67.8 NC_006560.1 + 25961 0.66 0.439741
Target:  5'- gGGCCGCgGggggcgaggGCCgCgGGGGgcgagggcCGCGGGGGg -3'
miRNA:   3'- -CUGGUGgC---------UGGgGgCCCC--------GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 26019 0.66 0.44554
Target:  5'- gGGCCGCggggGACCCgCGcgcacggucccgucGGGCGCccGGGGGc -3'
miRNA:   3'- -CUGGUGg---CUGGGgGC--------------CCCGCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 26124 0.68 0.326752
Target:  5'- -uUCGCgGGggcCCCgCCGGGGCuGCGuGGGGg -3'
miRNA:   3'- cuGGUGgCU---GGG-GGCCCCG-CGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 26164 0.72 0.176452
Target:  5'- gGGCC-CCG-CCCCCGGGGaGCcuGGGGu -3'
miRNA:   3'- -CUGGuGGCuGGGGGCCCCgCGc-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 26227 0.68 0.340506
Target:  5'- cGGCCGCCagGAaCCCCGGaGGCcggGCcggaGGGGGg -3'
miRNA:   3'- -CUGGUGG--CUgGGGGCC-CCG---CG----CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 26376 0.69 0.294188
Target:  5'- aGACgGC--GCCCCggcCGGGGCGCaGGGGc -3'
miRNA:   3'- -CUGgUGgcUGGGG---GCCCCGCGcCCCC- -5'
30991 5' -67.8 NC_006560.1 + 26481 0.77 0.084478
Target:  5'- cGGCCGgCGGCCCCggcggggggCGGGcGCGCGaGGGGg -3'
miRNA:   3'- -CUGGUgGCUGGGG---------GCCC-CGCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 26658 0.68 0.306902
Target:  5'- gGGCCGCgGGggggaCGGGGcCGCGGGGGg -3'
miRNA:   3'- -CUGGUGgCUgggg-GCCCC-GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 26711 0.71 0.216555
Target:  5'- cGCCGCgGGCgCgCCGGGGUGCGaaccuGGGGc -3'
miRNA:   3'- cUGGUGgCUGgG-GGCCCCGCGC-----CCCC- -5'
30991 5' -67.8 NC_006560.1 + 26806 0.68 0.333577
Target:  5'- aGAgCGa-GACCgaCGGGGCGCGcGGGGg -3'
miRNA:   3'- -CUgGUggCUGGggGCCCCGCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 26834 0.67 0.376694
Target:  5'- --aCGCCGGggaCCCGGGGCGCGGc-- -3'
miRNA:   3'- cugGUGGCUgg-GGGCCCCGCGCCccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.