miRNA display CGI


Results 81 - 100 of 306 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 26857 0.75 0.108354
Target:  5'- cGGCCGCCGcCCCCCGGcgcccguGGCGggagagcgagaccgaCGGGGGc -3'
miRNA:   3'- -CUGGUGGCuGGGGGCC-------CCGC---------------GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 26946 0.75 0.115591
Target:  5'- gGGCCGCgGAggccggggaaCCCCacaggCGGGGCGgGGGGGg -3'
miRNA:   3'- -CUGGUGgCU----------GGGG-----GCCCCGCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 27267 0.72 0.172428
Target:  5'- --gCGCCGGCCgCggccgcgggggCGGGGCGCGGGGc -3'
miRNA:   3'- cugGUGGCUGGgG-----------GCCCCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 27358 0.79 0.054181
Target:  5'- cGCCGCCGAaccgcCCCgCCGGgaaacgcGGCGCGGGGGg -3'
miRNA:   3'- cUGGUGGCU-----GGG-GGCC-------CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 27571 0.69 0.281889
Target:  5'- -cCCGCCGgaagcugagGCCgCCGGcGCGCGGGuGGg -3'
miRNA:   3'- cuGGUGGC---------UGGgGGCCcCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 27799 0.75 0.118385
Target:  5'- cGGCCGCCGuuCCUUCGGcGCGCGGGGc -3'
miRNA:   3'- -CUGGUGGCu-GGGGGCCcCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 27832 0.67 0.354674
Target:  5'- cGCgGCCGGgggUgCCgGGGGUGCcGGGGGu -3'
miRNA:   3'- cUGgUGGCU---GgGGgCCCCGCG-CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 28545 0.67 0.391878
Target:  5'- cGCgCGCCG-CCCCUGGGGgccgccccgcgcCGCGGcGGa -3'
miRNA:   3'- cUG-GUGGCuGGGGGCCCC------------GCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 29349 0.66 0.429087
Target:  5'- cGGCCuCgGAgCCCCGGGuCGCuccuccgcccagguGGGGGu -3'
miRNA:   3'- -CUGGuGgCUgGGGGCCCcGCG--------------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 30079 0.66 0.423414
Target:  5'- gGACgCACCGcCuCCCCGGGGagGCGGccccGGc -3'
miRNA:   3'- -CUG-GUGGCuG-GGGGCCCCg-CGCCc---CC- -5'
30991 5' -67.8 NC_006560.1 + 30493 0.72 0.184327
Target:  5'- cGCC-CCGGCCCCCcgcgccuccggcgGGGGagggggaggggGCGGGGGg -3'
miRNA:   3'- cUGGuGGCUGGGGG-------------CCCCg----------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 31124 0.66 0.423414
Target:  5'- cGGgCGCCGggggcGCCUCCGGcuCGCGGGGa -3'
miRNA:   3'- -CUgGUGGC-----UGGGGGCCccGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 31789 0.75 0.109925
Target:  5'- cGCCACCccugGACCCCCGccgaGGGCgacccguagggacGCGGGGGu -3'
miRNA:   3'- cUGGUGG----CUGGGGGC----CCCG-------------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 31843 0.68 0.340506
Target:  5'- cGCCGCgCGACgCgCGGGGgGgccgaGGGGGg -3'
miRNA:   3'- cUGGUG-GCUGgGgGCCCCgCg----CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32416 0.7 0.252932
Target:  5'- gGGCCgagGCCcGCCCagGGGGC-CGGGGGg -3'
miRNA:   3'- -CUGG---UGGcUGGGggCCCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32469 0.78 0.069483
Target:  5'- gGGCUGCgGGcuCCCCCGGGGCGCcagcaggaaGGGGGg -3'
miRNA:   3'- -CUGGUGgCU--GGGGGCCCCGCG---------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32554 0.74 0.127146
Target:  5'- uGCgGCCc-CCCCCaGGGGgGCGGGGGc -3'
miRNA:   3'- cUGgUGGcuGGGGG-CCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32578 0.71 0.216555
Target:  5'- nGCCAgaGcCCCCCgcagggacacGGGGgGCGGGGGc -3'
miRNA:   3'- cUGGUggCuGGGGG----------CCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32670 0.68 0.313414
Target:  5'- cGGCaCGgggUCGGCCCagagggCCGGGGC-CGGGGGc -3'
miRNA:   3'- -CUG-GU---GGCUGGG------GGCCCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32716 0.66 0.431532
Target:  5'- gGGCgCGCgGGCCCgggguccguCgGGGGgGCGGGGc -3'
miRNA:   3'- -CUG-GUGgCUGGG---------GgCCCCgCGCCCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.