miRNA display CGI


Results 101 - 120 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 32754 0.71 0.202385
Target:  5'- cGGCgCGCCGGCCggggucucggggUCCGaGGGCGaGGGGGa -3'
miRNA:   3'- -CUG-GUGGCUGG------------GGGC-CCCGCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32838 0.68 0.333577
Target:  5'- gGGCCACgCGggcggcgggcaGCCCCCcGGGCagaGGGGGc -3'
miRNA:   3'- -CUGGUG-GC-----------UGGGGGcCCCGcg-CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32890 0.67 0.376694
Target:  5'- aGGCCGCgGgggggcgcGCCCgCGGGGUagccGCcGGGGGc -3'
miRNA:   3'- -CUGGUGgC--------UGGGgGCCCCG----CG-CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 33178 0.67 0.391109
Target:  5'- cGGCCGCgGggaagggGCCCgCGGGGaaggcggcCGCGGGGc -3'
miRNA:   3'- -CUGGUGgC-------UGGGgGCCCC--------GCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 33490 0.67 0.36704
Target:  5'- gGGCCGCCGgcagggaggcgggcGCCggCCCGGGG-GuCGGGGu -3'
miRNA:   3'- -CUGGUGGC--------------UGG--GGGCCCCgC-GCCCCc -5'
30991 5' -67.8 NC_006560.1 + 33616 0.7 0.247443
Target:  5'- aGACCACCagGAgCaggGGGGgGCGGGGGg -3'
miRNA:   3'- -CUGGUGG--CUgGgggCCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 33655 0.66 0.415387
Target:  5'- cGGCCGCgGGCCgcuuaggcgagCCCGgcGGGCgucuGCGGGGa -3'
miRNA:   3'- -CUGGUGgCUGG-----------GGGC--CCCG----CGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 33804 0.67 0.347538
Target:  5'- -gUCGCgGGCgCggaCGGGGgGCGGGGGu -3'
miRNA:   3'- cuGGUGgCUGgGg--GCCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 34320 0.69 0.264211
Target:  5'- gGGCCGCCGcCCCCCGGuaCGCcuGGGu -3'
miRNA:   3'- -CUGGUGGCuGGGGGCCccGCGccCCC- -5'
30991 5' -67.8 NC_006560.1 + 34376 0.72 0.168486
Target:  5'- -cCCGCCG--CCUCGGGGUcgccGCGGGGGg -3'
miRNA:   3'- cuGGUGGCugGGGGCCCCG----CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 34506 0.71 0.197844
Target:  5'- cGGCUccggagGCCGGCa--CGGGGCGCGcGGGGg -3'
miRNA:   3'- -CUGG------UGGCUGgggGCCCCGCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 34617 0.69 0.281889
Target:  5'- uGGCCGCgCGG-CUCgGGGGCGCGGaGGu -3'
miRNA:   3'- -CUGGUG-GCUgGGGgCCCCGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 34939 0.73 0.149966
Target:  5'- gGGCCGcucCCGcGCCCCCGGGGCcCGGGcgccGGg -3'
miRNA:   3'- -CUGGU---GGC-UGGGGGCCCCGcGCCC----CC- -5'
30991 5' -67.8 NC_006560.1 + 34976 0.74 0.136504
Target:  5'- -uCCGCCgGGCCCCCcGGGCGCcucGGGGc -3'
miRNA:   3'- cuGGUGG-CUGGGGGcCCCGCGc--CCCC- -5'
30991 5' -67.8 NC_006560.1 + 35171 0.81 0.043343
Target:  5'- cGGCCGCCGggcccggggccccGCCCCgGGGGCGCcGGGGc -3'
miRNA:   3'- -CUGGUGGC-------------UGGGGgCCCCGCGcCCCC- -5'
30991 5' -67.8 NC_006560.1 + 35270 0.76 0.090861
Target:  5'- cGGCCGCCGcGCCgggcggcggggCCCGGGGUcCGGGGGc -3'
miRNA:   3'- -CUGGUGGC-UGG-----------GGGCCCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 35347 0.8 0.045665
Target:  5'- cGCCcCCGGCCCCCGaGGcGCGCGcGGGGc -3'
miRNA:   3'- cUGGuGGCUGGGGGC-CC-CGCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 35518 0.72 0.168486
Target:  5'- aGGCCGCgCcucccauuagGGCCCgCgCGGGGCGgGGGGGc -3'
miRNA:   3'- -CUGGUG-G----------CUGGG-G-GCCCCGCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 35636 0.69 0.270002
Target:  5'- -cCCGcCCGGCCUCgGGGuGCGCGGaGGu -3'
miRNA:   3'- cuGGU-GGCUGGGGgCCC-CGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 35943 0.72 0.172428
Target:  5'- cGCCGCgCG-CCaaCGcGGGCGCGGGGGc -3'
miRNA:   3'- cUGGUG-GCuGGggGC-CCCGCGCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.