miRNA display CGI


Results 121 - 140 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 35989 0.73 0.164625
Target:  5'- cGCCACCuucGCCCCCcccuccggaGGGG-GUGGGGGg -3'
miRNA:   3'- cUGGUGGc--UGGGGG---------CCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 36124 0.68 0.333577
Target:  5'- gGGCCGCCG-CCgCCGGGGUcgaGCcGGGc -3'
miRNA:   3'- -CUGGUGGCuGGgGGCCCCG---CGcCCCc -5'
30991 5' -67.8 NC_006560.1 + 36171 0.72 0.189028
Target:  5'- gGACCgGCgGACCCCCGguccGGGCuCGGGGc -3'
miRNA:   3'- -CUGG-UGgCUGGGGGC----CCCGcGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 38097 0.67 0.383478
Target:  5'- uGCCGCgGGuuUCUGGGGCggcguuuGUGGGGGc -3'
miRNA:   3'- cUGGUGgCUggGGGCCCCG-------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 39373 0.7 0.258521
Target:  5'- cGGCCccggcGCCggGACCCCCGggccgaacucGGGCuCGGGGGc -3'
miRNA:   3'- -CUGG-----UGG--CUGGGGGC----------CCCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 39600 0.69 0.264211
Target:  5'- gGGCgCGCCGGCCCgCGGaGcGcCGCGGcGGGc -3'
miRNA:   3'- -CUG-GUGGCUGGGgGCC-C-C-GCGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 40467 0.69 0.263637
Target:  5'- cGACCGCCGugcugacgaucaGCCCCUGGcucgccaGGCGCaGGaGGa -3'
miRNA:   3'- -CUGGUGGC------------UGGGGGCC-------CCGCGcCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 42467 0.68 0.320031
Target:  5'- uGCCcgGCCG-CCgUCGGGGCGgucgaGGGGGc -3'
miRNA:   3'- cUGG--UGGCuGGgGGCCCCGCg----CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 42539 0.74 0.133317
Target:  5'- aGCC-CCaGCgCCCCGGGGuCGCGcGGGGa -3'
miRNA:   3'- cUGGuGGcUG-GGGGCCCC-GCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 42654 0.69 0.287373
Target:  5'- --aCGCCuGCCCCCGGGGCGCcauGGcgauccgguacacGGGc -3'
miRNA:   3'- cugGUGGcUGGGGGCCCCGCG---CC-------------CCC- -5'
30991 5' -67.8 NC_006560.1 + 42832 0.68 0.320031
Target:  5'- -cUCGCCGGCCUUgGGcGGgGCGGcGGGc -3'
miRNA:   3'- cuGGUGGCUGGGGgCC-CCgCGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 43748 0.66 0.448039
Target:  5'- cGGCCGCCGcgguGCgCCCCGu-GCGCGGGccGGc -3'
miRNA:   3'- -CUGGUGGC----UG-GGGGCccCGCGCCC--CC- -5'
30991 5' -67.8 NC_006560.1 + 44311 0.71 0.221463
Target:  5'- cGAUgGCCGGucUUCUCGGGGCGCucugcggcuGGGGGg -3'
miRNA:   3'- -CUGgUGGCU--GGGGGCCCCGCG---------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 45303 0.72 0.176452
Target:  5'- --aCGCCG-UCCCCGGGGaCGUugucGGGGGg -3'
miRNA:   3'- cugGUGGCuGGGGGCCCC-GCG----CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 45431 0.73 0.146492
Target:  5'- cGCgCACUGGCgCCCGGGcagccaucGCGUGGGGGu -3'
miRNA:   3'- cUG-GUGGCUGgGGGCCC--------CGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 45735 0.72 0.176452
Target:  5'- aGGCgCGCCGcgggcucgcGCCCCCGccagggguuGGCGUGGGGGg -3'
miRNA:   3'- -CUG-GUGGC---------UGGGGGCc--------CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 45793 0.74 0.132374
Target:  5'- -uCCGCCGgggccuuuugGCCCCCGGGGCGgagcacaggaagacCGGGGu -3'
miRNA:   3'- cuGGUGGC----------UGGGGGCCCCGC--------------GCCCCc -5'
30991 5' -67.8 NC_006560.1 + 46322 0.69 0.281889
Target:  5'- cGCCcuaGCCGGCCgcgCCCaGGGUagcuccGCGGGGGa -3'
miRNA:   3'- cUGG---UGGCUGG---GGGcCCCG------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 46537 0.68 0.340506
Target:  5'- cGCC-CCGGCCCcaaacggaagCCGGGGCGCcguccGGGu -3'
miRNA:   3'- cUGGuGGCUGGG----------GGCCCCGCGc----CCCc -5'
30991 5' -67.8 NC_006560.1 + 47164 0.66 0.415387
Target:  5'- --gCGCCGAgCUCgCGaGGCGCGaGGGGg -3'
miRNA:   3'- cugGUGGCUgGGG-GCcCCGCGC-CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.