miRNA display CGI


Results 141 - 160 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 48956 0.67 0.361912
Target:  5'- cGGCCACCGAggagCCCGGGGcCGCGcugacGGcGGc -3'
miRNA:   3'- -CUGGUGGCUgg--GGGCCCC-GCGC-----CC-CC- -5'
30991 5' -67.8 NC_006560.1 + 50085 0.7 0.226466
Target:  5'- cGCCGCCGGCCCcgCCGGcGGCaCGGGc- -3'
miRNA:   3'- cUGGUGGCUGGG--GGCC-CCGcGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 50198 0.67 0.361912
Target:  5'- cGGCC-CCGgacGCCCCCGGGcG-GCGGcGGc -3'
miRNA:   3'- -CUGGuGGC---UGGGGGCCC-CgCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 50250 0.74 0.132374
Target:  5'- uGGCCGCCGcGCCUCCGGGcggccgggcucggcGCGCccccGGGGGu -3'
miRNA:   3'- -CUGGUGGC-UGGGGGCCC--------------CGCG----CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 50394 0.68 0.340506
Target:  5'- cGACgagGgCGACUaCCCGGGcGCgGCGGGGGc -3'
miRNA:   3'- -CUGg--UgGCUGG-GGGCCC-CG-CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 51849 0.73 0.156775
Target:  5'- -cCCcCCGcGCCCCUGGGGCGCGGcgcguccgcgcucGGGc -3'
miRNA:   3'- cuGGuGGC-UGGGGGCCCCGCGCC-------------CCC- -5'
30991 5' -67.8 NC_006560.1 + 52512 0.67 0.347538
Target:  5'- cGGCCGCggCGGagUCCCUGGcGGagGCGGGGGc -3'
miRNA:   3'- -CUGGUG--GCU--GGGGGCC-CCg-CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 54749 0.7 0.231565
Target:  5'- aGCCAcCCGGCCCCgCaGGGCGCGaGGc -3'
miRNA:   3'- cUGGU-GGCUGGGG-GcCCCGCGCcCCc -5'
30991 5' -67.8 NC_006560.1 + 54880 0.71 0.221463
Target:  5'- aGCCGCgaGacGCCCCCGGGG-GCcaGGGGGc -3'
miRNA:   3'- cUGGUGg-C--UGGGGGCCCCgCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 54929 0.66 0.41459
Target:  5'- gGGCCGgggCGGCCaucgUCGGGGCucgcgcgccggcgGCGGGGGa -3'
miRNA:   3'- -CUGGUg--GCUGGg---GGCCCCG-------------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 55308 0.74 0.130198
Target:  5'- cACCuGCUGGCCCaCGGGGuCGCGGGGcGg -3'
miRNA:   3'- cUGG-UGGCUGGGgGCCCC-GCGCCCC-C- -5'
30991 5' -67.8 NC_006560.1 + 55476 0.72 0.189028
Target:  5'- -cCCGCCGGCgacgacggcguuUUCCGcGGGCGCGGGGu -3'
miRNA:   3'- cuGGUGGCUG------------GGGGC-CCCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 56685 0.69 0.300493
Target:  5'- -cCCGcCCGACCCCaccacggGGGGCcCGGGuGGu -3'
miRNA:   3'- cuGGU-GGCUGGGGg------CCCCGcGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 57862 0.67 0.391878
Target:  5'- gGGCgGCaggGGCUCCCGGGGCcccccGCGGGu- -3'
miRNA:   3'- -CUGgUGg--CUGGGGGCCCCG-----CGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 57963 0.71 0.216555
Target:  5'- cGGCgCGCCuuauaGCCCCCGcucGGCGCGGGcGGa -3'
miRNA:   3'- -CUG-GUGGc----UGGGGGCc--CCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 58264 0.68 0.326752
Target:  5'- aGCCGCCGGCCUCggcgucgaCGGGGUcuucCGGGGc -3'
miRNA:   3'- cUGGUGGCUGGGG--------GCCCCGc---GCCCCc -5'
30991 5' -67.8 NC_006560.1 + 59572 0.68 0.340506
Target:  5'- aGGCCACaccCUCCCGuGGGUGCcGGGcGGg -3'
miRNA:   3'- -CUGGUGgcuGGGGGC-CCCGCG-CCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 60637 0.76 0.090861
Target:  5'- uGCgGCUGGaccCCCCCGGGGCagacgcGCGGGGGc -3'
miRNA:   3'- cUGgUGGCU---GGGGGCCCCG------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 62352 0.67 0.347538
Target:  5'- --gUACCG-CUCCgggucggggaCGGGGuCGCGGGGGg -3'
miRNA:   3'- cugGUGGCuGGGG----------GCCCC-GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 64955 0.74 0.127146
Target:  5'- cGCCGCCGGcggccucguCCCCCucggcGGGGCcggccgccGCGGGGGg -3'
miRNA:   3'- cUGGUGGCU---------GGGGG-----CCCCG--------CGCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.