miRNA display CGI


Results 41 - 60 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 137145 0.76 0.094678
Target:  5'- uGACCACCGAgCUCCUGgcgcucggggcggaGGGCGCGGaGGGc -3'
miRNA:   3'- -CUGGUGGCU-GGGGGC--------------CCCGCGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 135967 0.72 0.168486
Target:  5'- uGAUCGCCGACaucaCCCGGcGCGCGGuGGcGg -3'
miRNA:   3'- -CUGGUGGCUGg---GGGCCcCGCGCC-CC-C- -5'
30991 5' -67.8 NC_006560.1 + 135354 0.68 0.316048
Target:  5'- cGGCCGCgGACCggagucgcgcggccaCgCGGGGgggcggaggcCGCGGGGGu -3'
miRNA:   3'- -CUGGUGgCUGG---------------GgGCCCC----------GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 134953 0.67 0.391878
Target:  5'- -cCCACCGACCCgCCGGGuccgcacuGCGCGa--- -3'
miRNA:   3'- cuGGUGGCUGGG-GGCCC--------CGCGCcccc -5'
30991 5' -67.8 NC_006560.1 + 132315 0.67 0.387281
Target:  5'- -cCCAgCGGCgCggCCGGGGCGCacgcggucgcggggcGGGGGu -3'
miRNA:   3'- cuGGUgGCUGgG--GGCCCCGCG---------------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 132020 0.69 0.275301
Target:  5'- cGACC-CCGgagacacGCCCCCGGccgccgcgcuGCGCGGcGGGg -3'
miRNA:   3'- -CUGGuGGC-------UGGGGGCCc---------CGCGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 131665 0.71 0.216555
Target:  5'- -gUCGCCGGCgaggCCCUGGcGG-GCGGGGGg -3'
miRNA:   3'- cuGGUGGCUG----GGGGCC-CCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 131354 0.87 0.014775
Target:  5'- --gCGCCGACCCCCGGgacccccuGGCGCGGGGGg -3'
miRNA:   3'- cugGUGGCUGGGGGCC--------CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 131217 0.66 0.415387
Target:  5'- --gCGCCGGCCCgcgacgCCGGGGCuGCGGcugcuGGa -3'
miRNA:   3'- cugGUGGCUGGG------GGCCCCG-CGCCc----CC- -5'
30991 5' -67.8 NC_006560.1 + 131158 0.66 0.430716
Target:  5'- -cCCGCgCGGCUCUgGGcGGCggccgccGCGGGGGc -3'
miRNA:   3'- cuGGUG-GCUGGGGgCC-CCG-------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 130305 0.69 0.300493
Target:  5'- cGGCCGCCGGCgCgguggCGGcGGCGCGGGc- -3'
miRNA:   3'- -CUGGUGGCUGgGg----GCC-CCGCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 129721 0.71 0.211739
Target:  5'- aGAgCACCcaGACCuuCCCGGGGUGgGGcGGGu -3'
miRNA:   3'- -CUgGUGG--CUGG--GGGCCCCGCgCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 129320 0.73 0.160844
Target:  5'- cGCCGCCGGCgucgUCCCGaccguGGGCccgGCGGGGGa -3'
miRNA:   3'- cUGGUGGCUG----GGGGC-----CCCG---CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 128273 0.71 0.197844
Target:  5'- uGCgCGCCGaggggggggaggGCCCCgGGGGCGCGcccgcGGGGc -3'
miRNA:   3'- cUG-GUGGC------------UGGGGgCCCCGCGC-----CCCC- -5'
30991 5' -67.8 NC_006560.1 + 127474 0.68 0.326752
Target:  5'- cGCCGCgCGcgagacgggcucGCCgCCCGcGGGCGCGGcGGa -3'
miRNA:   3'- cUGGUG-GC------------UGG-GGGC-CCCGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 126782 0.7 0.242052
Target:  5'- aGGCaCACCagGACCCCgGGGGCggacaGCGGGa- -3'
miRNA:   3'- -CUG-GUGG--CUGGGGgCCCCG-----CGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 125030 0.67 0.384236
Target:  5'- -cCCACCGGCggCUGGuGGCGCGGcGGu -3'
miRNA:   3'- cuGGUGGCUGggGGCC-CCGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 124495 0.71 0.211263
Target:  5'- cGCCGCCGACCCCCGGccccucauGGCGUucuucgaGGcGGc -3'
miRNA:   3'- cUGGUGGCUGGGGGCC--------CCGCG-------CC-CCc -5'
30991 5' -67.8 NC_006560.1 + 124327 0.66 0.399618
Target:  5'- cGAgCGCC-ACCUCCGcGGGUugcuGCGGGGc -3'
miRNA:   3'- -CUgGUGGcUGGGGGC-CCCG----CGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 123293 0.66 0.423414
Target:  5'- aGCCGCCG--CCCCGGGGUucCGGGa- -3'
miRNA:   3'- cUGGUGGCugGGGGCCCCGc-GCCCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.