miRNA display CGI


Results 61 - 80 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 122763 0.67 0.364836
Target:  5'- cACCACCcucGAggUCCCCGGGGCccggagcuucggcggGUccGGGGGg -3'
miRNA:   3'- cUGGUGG---CU--GGGGGCCCCG---------------CG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 122634 0.73 0.146492
Target:  5'- -cCCGCCcGCCCCUGcGGCccGCGGGGGg -3'
miRNA:   3'- cuGGUGGcUGGGGGCcCCG--CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 122011 0.66 0.407455
Target:  5'- aGACgCugCGGCUgcaCCGGGaGgGCGuGGGGa -3'
miRNA:   3'- -CUG-GugGCUGGg--GGCCC-CgCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 120123 0.74 0.133317
Target:  5'- cGCC-CUGGgCCCCGGGGCGUGGuGGc -3'
miRNA:   3'- cUGGuGGCUgGGGGCCCCGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 119572 0.66 0.448873
Target:  5'- cGCCGCCGgacagcgcccgGCCCCgcccugcuccccggCGGGGCccgagggccccgacgGCGGcGGGg -3'
miRNA:   3'- cUGGUGGC-----------UGGGG--------------GCCCCG---------------CGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 119500 0.68 0.333577
Target:  5'- -uCUGCCGggagguGCCUCCGGGcCGCGGGGc -3'
miRNA:   3'- cuGGUGGC------UGGGGGCCCcGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 118426 0.72 0.180559
Target:  5'- cGGCUACCGcGCCCCgGGGGCGaGGuccuGGGc -3'
miRNA:   3'- -CUGGUGGC-UGGGGgCCCCGCgCC----CCC- -5'
30991 5' -67.8 NC_006560.1 + 118377 0.75 0.118385
Target:  5'- gGGCCuggaGCCCCCGGGGgGCGGGcGGu -3'
miRNA:   3'- -CUGGuggcUGGGGGCCCCgCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 118232 0.69 0.300493
Target:  5'- -cCCGCCGGCaCCCGGuccGCGCGGGcgcGGa -3'
miRNA:   3'- cuGGUGGCUGgGGGCCc--CGCGCCC---CC- -5'
30991 5' -67.8 NC_006560.1 + 118016 0.67 0.347538
Target:  5'- aGGCCGCgGcGCaCCUggcggCGGGGCucgGCGGGGGc -3'
miRNA:   3'- -CUGGUGgC-UG-GGG-----GCCCCG---CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 116430 0.68 0.311449
Target:  5'- aGAgCACCGcGCCCCCGGGGggcucgcagUGguagaagaggagcuCGGGGGc -3'
miRNA:   3'- -CUgGUGGC-UGGGGGCCCC---------GC--------------GCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 114324 0.72 0.18475
Target:  5'- -uCCGCCG-CCCCUgcaacccgcgGGGGCGCGcggccGGGGg -3'
miRNA:   3'- cuGGUGGCuGGGGG----------CCCCGCGC-----CCCC- -5'
30991 5' -67.8 NC_006560.1 + 113630 0.68 0.318035
Target:  5'- cGACCAcgugaugaacgcgcCCGGcuuCCCCgCGGGGCuGCGGGa- -3'
miRNA:   3'- -CUGGU--------------GGCU---GGGG-GCCCCG-CGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 112481 0.67 0.361912
Target:  5'- uGCCccuguguCCGACCgcguUCCGGGacGCGCGGGGc -3'
miRNA:   3'- cUGGu------GGCUGG----GGGCCC--CGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 112398 0.66 0.439741
Target:  5'- cGACCuGCCgGGCCCCCGGGcccccccCGCcGGGc -3'
miRNA:   3'- -CUGG-UGG-CUGGGGGCCCc------GCGcCCCc -5'
30991 5' -67.8 NC_006560.1 + 110437 0.66 0.407455
Target:  5'- gGGCCGCCGcCgCCCUGuGGGUGgCGGcGGc -3'
miRNA:   3'- -CUGGUGGCuG-GGGGC-CCCGC-GCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 110255 0.7 0.251275
Target:  5'- -cCCGCUGGCCCCCucgaccuucuGGGCGCugucccucugguacGGGGGc -3'
miRNA:   3'- cuGGUGGCUGGGGGc---------CCCGCG--------------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 108518 0.74 0.130198
Target:  5'- cGGCCGgCGGCgggCCCgGGGGCGCGucGGGGc -3'
miRNA:   3'- -CUGGUgGCUG---GGGgCCCCGCGC--CCCC- -5'
30991 5' -67.8 NC_006560.1 + 107231 0.7 0.242052
Target:  5'- aGACgCGCCGcgaCCUGGGGCucGUGGGGGc -3'
miRNA:   3'- -CUG-GUGGCuggGGGCCCCG--CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 106326 0.69 0.264211
Target:  5'- uGGCUcuGCgCGGCCCCgCGGGGUGCGagccGGGc -3'
miRNA:   3'- -CUGG--UG-GCUGGGG-GCCCCGCGCc---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.