miRNA display CGI


Results 81 - 100 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 105122 0.67 0.369252
Target:  5'- gGACCGCUacugGGcCCCCCGGGucgacGCGUGGuaccGGGa -3'
miRNA:   3'- -CUGGUGG----CU-GGGGGCCC-----CGCGCC----CCC- -5'
30991 5' -67.8 NC_006560.1 + 104763 0.8 0.044544
Target:  5'- uGGCCcCCG-CCCCgggcgGGGGCGCGGGGGg -3'
miRNA:   3'- -CUGGuGGCuGGGGg----CCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 104245 0.66 0.399618
Target:  5'- -cCCGaCGACCCCCGGGaccaaccucguGCuCGGGGa -3'
miRNA:   3'- cuGGUgGCUGGGGGCCC-----------CGcGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 103104 0.71 0.197844
Target:  5'- -cCCGCgGACCCggCGGcGGaCGCGGGGGc -3'
miRNA:   3'- cuGGUGgCUGGGg-GCC-CC-GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 103064 0.75 0.105023
Target:  5'- gGGCCGCCGGuuCCgCGGGGa-CGGGGGg -3'
miRNA:   3'- -CUGGUGGCUggGG-GCCCCgcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 103027 0.71 0.221463
Target:  5'- cGCCcggUCGACgCgCGGGGCGCGGGcGGc -3'
miRNA:   3'- cUGGu--GGCUGgGgGCCCCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 102622 0.78 0.064549
Target:  5'- -uCCGCCGuCUCCCGGGGgagguuaaaCGCGGGGGc -3'
miRNA:   3'- cuGGUGGCuGGGGGCCCC---------GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 100778 0.75 0.115315
Target:  5'- cGGCguCgGACCCCuCGGGGCaucggggccgucgGCGGGGGc -3'
miRNA:   3'- -CUGguGgCUGGGG-GCCCCG-------------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 99839 0.75 0.107318
Target:  5'- gGGCgGCCGggauccagagguaGCUCCCgucgccggGGGGCGCGGGGGu -3'
miRNA:   3'- -CUGgUGGC-------------UGGGGG--------CCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 99781 0.71 0.211739
Target:  5'- cGCCGCCGggGCCCCaaaCGGGGCccCGGGGc -3'
miRNA:   3'- cUGGUGGC--UGGGG---GCCCCGc-GCCCCc -5'
30991 5' -67.8 NC_006560.1 + 99739 0.71 0.221463
Target:  5'- cGCCGCCgGGgCCCCGacgacgcccGGGUGgGGGGGc -3'
miRNA:   3'- cUGGUGG-CUgGGGGC---------CCCGCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 99590 0.68 0.326752
Target:  5'- uAUCuCCGGCgcuuCCCCGGcGCgGCGGGGGg -3'
miRNA:   3'- cUGGuGGCUG----GGGGCCcCG-CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 99483 0.69 0.300493
Target:  5'- gGGCgCGCCG-CCCggcggaguCCGGGGCgaaGCGGGGc -3'
miRNA:   3'- -CUG-GUGGCuGGG--------GGCCCCG---CGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 99339 0.68 0.313414
Target:  5'- cGGCCGCCGccuCCCacugcgCCGGcugggcguacuGGgGCGGGGGc -3'
miRNA:   3'- -CUGGUGGCu--GGG------GGCC-----------CCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 99285 0.7 0.252932
Target:  5'- gGGCCGgCGGCUggggUCgggggagguggUGGGGCGCGGGGGc -3'
miRNA:   3'- -CUGGUgGCUGG----GG-----------GCCCCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 99148 0.66 0.422607
Target:  5'- -gUCGCCGGCCUcgCCGGGG-GCGGccgucccGGGc -3'
miRNA:   3'- cuGGUGGCUGGG--GGCCCCgCGCC-------CCC- -5'
30991 5' -67.8 NC_006560.1 + 98842 0.71 0.193392
Target:  5'- -cCCACCcccuCCCCCGGGG-GaGGGGGa -3'
miRNA:   3'- cuGGUGGcu--GGGGGCCCCgCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 97628 0.71 0.207016
Target:  5'- cGGCCACCGucgGCCgCCGGGugaGCGCGcgcaugcucGGGGa -3'
miRNA:   3'- -CUGGUGGC---UGGgGGCCC---CGCGC---------CCCC- -5'
30991 5' -67.8 NC_006560.1 + 97381 0.67 0.383478
Target:  5'- cGGCgGCCGGCCgggggcgacCCCGGGGagGCGGccaccccGGGc -3'
miRNA:   3'- -CUGgUGGCUGG---------GGGCCCCg-CGCC-------CCC- -5'
30991 5' -67.8 NC_006560.1 + 96081 0.66 0.412998
Target:  5'- uGAUCGCCGcggccggacgagccGCCCCCGcGGCGgCGGcGGc -3'
miRNA:   3'- -CUGGUGGC--------------UGGGGGCcCCGC-GCC-CCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.