miRNA display CGI


Results 101 - 120 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 93599 0.72 0.189028
Target:  5'- gGGCgGCCGGgCCCgGaGGGCguuuucguGCGGGGGa -3'
miRNA:   3'- -CUGgUGGCUgGGGgC-CCCG--------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 93368 0.67 0.384236
Target:  5'- cGCCucCCGugCCgUCGGGGgG-GGGGGc -3'
miRNA:   3'- cUGGu-GGCugGG-GGCCCCgCgCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 92883 0.67 0.391878
Target:  5'- cACCGCCcGCgCCCUGGaGCGCGGcGGcGg -3'
miRNA:   3'- cUGGUGGcUG-GGGGCCcCGCGCC-CC-C- -5'
30991 5' -67.8 NC_006560.1 + 92679 0.79 0.058493
Target:  5'- cGGCC-UUGACCCCCGGGG-GCGGGGc -3'
miRNA:   3'- -CUGGuGGCUGGGGGCCCCgCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 92427 0.66 0.439741
Target:  5'- -uCCACgaGCaCCCCGGGGCGUGGa-- -3'
miRNA:   3'- cuGGUGgcUG-GGGGCCCCGCGCCccc -5'
30991 5' -67.8 NC_006560.1 + 90438 0.66 0.407455
Target:  5'- cGCC-CCGggcaagGCCCCCaagGGGGgGCGGGa- -3'
miRNA:   3'- cUGGuGGC------UGGGGG---CCCCgCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 89320 0.67 0.376694
Target:  5'- gGACCucaGACggCCGGGGCGCGcGGGu -3'
miRNA:   3'- -CUGGuggCUGggGGCCCCGCGC-CCCc -5'
30991 5' -67.8 NC_006560.1 + 88870 0.66 0.423414
Target:  5'- cGCgGCCGugCCCCGGagacGGC-CGGGcgaGGg -3'
miRNA:   3'- cUGgUGGCugGGGGCC----CCGcGCCC---CC- -5'
30991 5' -67.8 NC_006560.1 + 88771 0.74 0.139762
Target:  5'- --gCGCgGACCCCCGGccGGC-CGGGGGu -3'
miRNA:   3'- cugGUGgCUGGGGGCC--CCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 85514 0.73 0.146492
Target:  5'- gGGCUGCUG-CCCgCgGGGGCGCuuGGGGGg -3'
miRNA:   3'- -CUGGUGGCuGGG-GgCCCCGCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 85242 0.66 0.431532
Target:  5'- --aCGCCGGCgCCCGcGGCGCGGa-- -3'
miRNA:   3'- cugGUGGCUGgGGGCcCCGCGCCccc -5'
30991 5' -67.8 NC_006560.1 + 84376 0.68 0.319365
Target:  5'- gGACCGCCGcgccucccggcucGCCCgCgacgacggcaGGGGCGCGGccaGGGc -3'
miRNA:   3'- -CUGGUGGC-------------UGGGgG----------CCCCGCGCC---CCC- -5'
30991 5' -67.8 NC_006560.1 + 83195 0.68 0.333577
Target:  5'- gGGCUGCCGggGCUgCCCGGGGCgccccccccgaaGCGGGcGGc -3'
miRNA:   3'- -CUGGUGGC--UGG-GGGCCCCG------------CGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 82600 0.68 0.340506
Target:  5'- cGGCuCGCCccgaGGCCCCgGacggcggcuGGGCgGCGGGGGc -3'
miRNA:   3'- -CUG-GUGG----CUGGGGgC---------CCCG-CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 81511 0.7 0.242052
Target:  5'- cGACC-UCGGCCCUCuGGGUGCGGuGGcGg -3'
miRNA:   3'- -CUGGuGGCUGGGGGcCCCGCGCC-CC-C- -5'
30991 5' -67.8 NC_006560.1 + 81423 0.66 0.39884
Target:  5'- cACCACCcgcgggccggggcGGCCCCgGucgcggcgucGGGCGCGGccGGGa -3'
miRNA:   3'- cUGGUGG-------------CUGGGGgC----------CCCGCGCC--CCC- -5'
30991 5' -67.8 NC_006560.1 + 80416 0.66 0.437269
Target:  5'- cGACCccaaCGACCCCCcaacgcccgaggcgGGGGCcCGGGa- -3'
miRNA:   3'- -CUGGug--GCUGGGGG--------------CCCCGcGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 80089 0.73 0.153516
Target:  5'- cACCACCGACaCCgCGGGG-GCGGGuGa -3'
miRNA:   3'- cUGGUGGCUG-GGgGCCCCgCGCCC-Cc -5'
30991 5' -67.8 NC_006560.1 + 79445 0.66 0.44305
Target:  5'- cGACC-CCGcuccgcggcgcgugaGCCCCCGGcGGCGCGuGa- -3'
miRNA:   3'- -CUGGuGGC---------------UGGGGGCC-CCGCGCcCcc -5'
30991 5' -67.8 NC_006560.1 + 78314 0.66 0.448039
Target:  5'- -uCUACCGGCCCUCGGGccaGCGCGuGcuGGu -3'
miRNA:   3'- cuGGUGGCUGGGGGCCC---CGCGC-Cc-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.