miRNA display CGI


Results 121 - 140 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 78096 0.69 0.287987
Target:  5'- gGGCCucgaCGGCCCCCGGG-CGCuGGuGGc -3'
miRNA:   3'- -CUGGug--GCUGGGGGCCCcGCGcCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 77095 0.78 0.066155
Target:  5'- cGCCGCCGcccGCgCCCacaGGGGCGCGGGcGGg -3'
miRNA:   3'- cUGGUGGC---UG-GGGg--CCCCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 77004 0.66 0.406667
Target:  5'- cGCuCGCCGgggaccuGCCCCCGuGGGCGgucgacgaguucCGGGGc -3'
miRNA:   3'- cUG-GUGGC-------UGGGGGC-CCCGC------------GCCCCc -5'
30991 5' -67.8 NC_006560.1 + 75961 0.7 0.247443
Target:  5'- uGGCCgcgcugaggGCCGACgUCCaccGGGCGCuGGGGGg -3'
miRNA:   3'- -CUGG---------UGGCUGgGGGc--CCCGCG-CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 75805 0.66 0.423414
Target:  5'- gGGCUGCUGGCCCUCucgcaGGC-CGGGGGc -3'
miRNA:   3'- -CUGGUGGCUGGGGGcc---CCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 75137 0.76 0.090861
Target:  5'- cGGCCGCCGACCUggcggCGGcGGUGCGGcGGGa -3'
miRNA:   3'- -CUGGUGGCUGGGg----GCC-CCGCGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 74296 0.68 0.333577
Target:  5'- cGCCGCCGACCa-CGcGGCcgGCGGGGa -3'
miRNA:   3'- cUGGUGGCUGGggGCcCCG--CGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 74032 0.67 0.361912
Target:  5'- cGCgGCCGACCUgCUGcGGGagcugcugcaGCGGGGGu -3'
miRNA:   3'- cUGgUGGCUGGG-GGC-CCCg---------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 73691 0.73 0.164625
Target:  5'- cGGCCcccuggcgguGgCGGCCCCCGaGGCGCccGGGGGg -3'
miRNA:   3'- -CUGG----------UgGCUGGGGGCcCCGCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 72334 0.72 0.189028
Target:  5'- -cCCGCCGcGCCUCCgucgGGGGUGUGGGGc -3'
miRNA:   3'- cuGGUGGC-UGGGGG----CCCCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 72252 0.78 0.071207
Target:  5'- gGGCgGaggGACCCCCGGGaccGCGCGGGGGg -3'
miRNA:   3'- -CUGgUgg-CUGGGGGCCC---CGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 71967 0.66 0.431532
Target:  5'- gGGCuCGCCGGCCUUCGucgcgaaggugcGGGC-CGGGGa -3'
miRNA:   3'- -CUG-GUGGCUGGGGGC------------CCCGcGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 71328 0.69 0.287987
Target:  5'- --gCGCCcGCUCgCGGGG-GCGGGGGa -3'
miRNA:   3'- cugGUGGcUGGGgGCCCCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 71101 0.7 0.231565
Target:  5'- cGGCC-CgGACCCCCcccgggaccuGGaGGUGCGGGaGGa -3'
miRNA:   3'- -CUGGuGgCUGGGGG----------CC-CCGCGCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 70910 0.68 0.340506
Target:  5'- aGCCGCCG-CgaCCuGGGCGCcuGGGGGg -3'
miRNA:   3'- cUGGUGGCuGggGGcCCCGCG--CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 70709 0.74 0.136504
Target:  5'- cGCCACgGGCCCCCGGcGCGUGGccgaguucguccGGGa -3'
miRNA:   3'- cUGGUGgCUGGGGGCCcCGCGCC------------CCC- -5'
30991 5' -67.8 NC_006560.1 + 70345 0.69 0.275894
Target:  5'- aGGCCcCCGACCgCCUGGGGCcCuGGGc -3'
miRNA:   3'- -CUGGuGGCUGG-GGGCCCCGcGcCCCc -5'
30991 5' -67.8 NC_006560.1 + 69439 0.7 0.247443
Target:  5'- cGGCuCugCGAggCCgCGGGGCugGCGGGGGg -3'
miRNA:   3'- -CUG-GugGCUg-GGgGCCCCG--CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 68097 0.82 0.033863
Target:  5'- cGACCGa-GGCCCCgGGGGaCGCGGGGGa -3'
miRNA:   3'- -CUGGUggCUGGGGgCCCC-GCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 67953 0.75 0.11259
Target:  5'- cACCACCGcCCCCCGcgacgccccccgaGGaCGCGGGGGc -3'
miRNA:   3'- cUGGUGGCuGGGGGC-------------CCcGCGCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.