miRNA display CGI


Results 41 - 60 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 20045 0.66 0.448039
Target:  5'- cGCCcgucguuCCGAgCCaUCGGGGCGUuccgacGGGGGc -3'
miRNA:   3'- cUGGu------GGCUgGG-GGCCCCGCG------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 5614 0.66 0.448039
Target:  5'- cGGCCGCCcGCCucauauacCCCGGccGGCGaCGGGcGGn -3'
miRNA:   3'- -CUGGUGGcUGG--------GGGCC--CCGC-GCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 24917 0.66 0.448039
Target:  5'- cGCCGCCGccGCgCCUGGGcCGCGGcGGc -3'
miRNA:   3'- cUGGUGGC--UGgGGGCCCcGCGCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 43748 0.66 0.448039
Target:  5'- cGGCCGCCGcgguGCgCCCCGu-GCGCGGGccGGc -3'
miRNA:   3'- -CUGGUGGC----UG-GGGGCccCGCGCCC--CC- -5'
30991 5' -67.8 NC_006560.1 + 119572 0.66 0.448873
Target:  5'- cGCCGCCGgacagcgcccgGCCCCgcccugcuccccggCGGGGCccgagggccccgacgGCGGcGGGg -3'
miRNA:   3'- cUGGUGGC-----------UGGGG--------------GCCCCG---------------CGCC-CCC- -5'
30991 5' -67.8 NC_006560.1 + 92427 0.66 0.439741
Target:  5'- -uCCACgaGCaCCCCGGGGCGUGGa-- -3'
miRNA:   3'- cuGGUGgcUG-GGGGCCCCGCGCCccc -5'
30991 5' -67.8 NC_006560.1 + 1094 0.66 0.439741
Target:  5'- -cCCGCCaGGCuCCCCGGcGGCGCGa--- -3'
miRNA:   3'- cuGGUGG-CUG-GGGGCC-CCGCGCcccc -5'
30991 5' -67.8 NC_006560.1 + 15685 0.66 0.423414
Target:  5'- cGGCCgggACCGAgCgCCacaGGGGCGCcgcaGGGGc -3'
miRNA:   3'- -CUGG---UGGCUgG-GGg--CCCCGCGc---CCCC- -5'
30991 5' -67.8 NC_006560.1 + 31124 0.66 0.423414
Target:  5'- cGGgCGCCGggggcGCCUCCGGcuCGCGGGGa -3'
miRNA:   3'- -CUgGUGGC-----UGGGGGCCccGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 88870 0.66 0.423414
Target:  5'- cGCgGCCGugCCCCGGagacGGC-CGGGcgaGGg -3'
miRNA:   3'- cUGgUGGCugGGGGCC----CCGcGCCC---CC- -5'
30991 5' -67.8 NC_006560.1 + 123293 0.66 0.423414
Target:  5'- aGCCGCCG--CCCCGGGGUucCGGGa- -3'
miRNA:   3'- cUGGUGGCugGGGGCCCCGc-GCCCcc -5'
30991 5' -67.8 NC_006560.1 + 29349 0.66 0.429087
Target:  5'- cGGCCuCgGAgCCCCGGGuCGCuccuccgcccagguGGGGGu -3'
miRNA:   3'- -CUGGuGgCUgGGGGCCCcGCG--------------CCCCC- -5'
30991 5' -67.8 NC_006560.1 + 131158 0.66 0.430716
Target:  5'- -cCCGCgCGGCUCUgGGcGGCggccgccGCGGGGGc -3'
miRNA:   3'- cuGGUG-GCUGGGGgCC-CCG-------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 32716 0.66 0.431532
Target:  5'- gGGCgCGCgGGCCCgggguccguCgGGGGgGCGGGGc -3'
miRNA:   3'- -CUG-GUGgCUGGG---------GgCCCCgCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 25895 0.66 0.431532
Target:  5'- gGGCCGCgCG-CCUCCgauGGGGCGCGcgcacGGGc -3'
miRNA:   3'- -CUGGUG-GCuGGGGG---CCCCGCGCc----CCC- -5'
30991 5' -67.8 NC_006560.1 + 71967 0.66 0.431532
Target:  5'- gGGCuCGCCGGCCUUCGucgcgaaggugcGGGC-CGGGGa -3'
miRNA:   3'- -CUG-GUGGCUGGGGGC------------CCCGcGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 85242 0.66 0.431532
Target:  5'- --aCGCCGGCgCCCGcGGCGCGGa-- -3'
miRNA:   3'- cugGUGGCUGgGGGCcCCGCGCCccc -5'
30991 5' -67.8 NC_006560.1 + 80416 0.66 0.437269
Target:  5'- cGACCccaaCGACCCCCcaacgcccgaggcgGGGGCcCGGGa- -3'
miRNA:   3'- -CUGGug--GCUGGGGG--------------CCCCGcGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 148371 0.66 0.437269
Target:  5'- aGGCCGCgCGaggGCUCCauggguccggggagCGGGGaCGCGGGGc -3'
miRNA:   3'- -CUGGUG-GC---UGGGG--------------GCCCC-GCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 147545 0.66 0.439741
Target:  5'- uGACgGgCUGGCCCaugCGGGcGgGCGGGGa -3'
miRNA:   3'- -CUGgU-GGCUGGGg--GCCC-CgCGCCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.