Results 81 - 100 of 306 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 96081 | 0.66 | 0.412998 |
Target: 5'- uGAUCGCCGcggccggacgagccGCCCCCGcGGCGgCGGcGGc -3' miRNA: 3'- -CUGGUGGC--------------UGGGGGCcCCGC-GCC-CCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 66919 | 0.66 | 0.412998 |
Target: 5'- cGCCGCCGuCCgccgcggcccccgcCCCGGGGCGgGccuuGGGc -3' miRNA: 3'- cUGGUGGCuGG--------------GGGCCCCGCgCc---CCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 137203 | 0.66 | 0.407455 |
Target: 5'- -cCCGCCGGCggCCGGGGaGCGGGc- -3' miRNA: 3'- cuGGUGGCUGggGGCCCCgCGCCCcc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 90438 | 0.66 | 0.407455 |
Target: 5'- cGCC-CCGggcaagGCCCCCaagGGGGgGCGGGa- -3' miRNA: 3'- cUGGuGGC------UGGGGG---CCCCgCGCCCcc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 144236 | 0.66 | 0.407455 |
Target: 5'- -cCCGCCG-CCucuccuccugCCCGGGcccgcccgcguGCGCGGGGa -3' miRNA: 3'- cuGGUGGCuGG----------GGGCCC-----------CGCGCCCCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 139294 | 0.66 | 0.407455 |
Target: 5'- nGGgCACCggGugCCCCGugggcgccucGGGCGCGGGa- -3' miRNA: 3'- -CUgGUGG--CugGGGGC----------CCCGCGCCCcc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 110437 | 0.66 | 0.407455 |
Target: 5'- gGGCCGCCGcCgCCCUGuGGGUGgCGGcGGc -3' miRNA: 3'- -CUGGUGGCuG-GGGGC-CCCGC-GCC-CCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 47164 | 0.66 | 0.415387 |
Target: 5'- --gCGCCGAgCUCgCGaGGCGCGaGGGGg -3' miRNA: 3'- cugGUGGCUgGGG-GCcCCGCGC-CCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 131217 | 0.66 | 0.415387 |
Target: 5'- --gCGCCGGCCCgcgacgCCGGGGCuGCGGcugcuGGa -3' miRNA: 3'- cugGUGGCUGGG------GGCCCCG-CGCCc----CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 150325 | 0.66 | 0.415387 |
Target: 5'- cGGCCccccgcGCCGcguuUCCCggCGGGGCgguucggcgGCGGGGGg -3' miRNA: 3'- -CUGG------UGGCu---GGGG--GCCCCG---------CGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 88870 | 0.66 | 0.423414 |
Target: 5'- cGCgGCCGugCCCCGGagacGGC-CGGGcgaGGg -3' miRNA: 3'- cUGgUGGCugGGGGCC----CCGcGCCC---CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 31124 | 0.66 | 0.423414 |
Target: 5'- cGGgCGCCGggggcGCCUCCGGcuCGCGGGGa -3' miRNA: 3'- -CUgGUGGC-----UGGGGGCCccGCGCCCCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 15685 | 0.66 | 0.423414 |
Target: 5'- cGGCCgggACCGAgCgCCacaGGGGCGCcgcaGGGGc -3' miRNA: 3'- -CUGG---UGGCUgG-GGg--CCCCGCGc---CCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 4979 | 0.66 | 0.423414 |
Target: 5'- cGCCuCCGAgCCggguccgagCCGGGG-GCGGGGu -3' miRNA: 3'- cUGGuGGCUgGG---------GGCCCCgCGCCCCc -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 30079 | 0.66 | 0.423414 |
Target: 5'- gGACgCACCGcCuCCCCGGGGagGCGGccccGGc -3' miRNA: 3'- -CUG-GUGGCuG-GGGGCCCCg-CGCCc---CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 19555 | 0.66 | 0.423414 |
Target: 5'- -uCCGgCGGcCCCCCGGaGGCGgcacCGGGcGGc -3' miRNA: 3'- cuGGUgGCU-GGGGGCC-CCGC----GCCC-CC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 75805 | 0.66 | 0.423414 |
Target: 5'- gGGCUGCUGGCCCUCucgcaGGC-CGGGGGc -3' miRNA: 3'- -CUGGUGGCUGGGGGcc---CCGcGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 99148 | 0.66 | 0.422607 |
Target: 5'- -gUCGCCGGCCUcgCCGGGG-GCGGccgucccGGGc -3' miRNA: 3'- cuGGUGGCUGGG--GGCCCCgCGCC-------CCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 20519 | 0.66 | 0.420996 |
Target: 5'- --gCACCGGCgCCUGGagccguucagaaccGGCgaggGCGGGGGg -3' miRNA: 3'- cugGUGGCUGgGGGCC--------------CCG----CGCCCCC- -5' |
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30991 | 5' | -67.8 | NC_006560.1 | + | 15845 | 0.66 | 0.420996 |
Target: 5'- -gUCGCCGACCaggaUcucguagucguacgCGGcGGCGUGGGGGc -3' miRNA: 3'- cuGGUGGCUGGg---G--------------GCC-CCGCGCCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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