miRNA display CGI


Results 101 - 120 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 5' -67.8 NC_006560.1 + 144786 0.66 0.399618
Target:  5'- uGCCcCuCGGCCCCCGGcGGCuaccccGCGGGc- -3'
miRNA:   3'- cUGGuG-GCUGGGGGCC-CCG------CGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 124327 0.66 0.399618
Target:  5'- cGAgCGCC-ACCUCCGcGGGUugcuGCGGGGc -3'
miRNA:   3'- -CUgGUGGcUGGGGGC-CCCG----CGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 81423 0.66 0.39884
Target:  5'- cACCACCcgcgggccggggcGGCCCCgGucgcggcgucGGGCGCGGccGGGa -3'
miRNA:   3'- cUGGUGG-------------CUGGGGgC----------CCCGCGCC--CCC- -5'
30991 5' -67.8 NC_006560.1 + 2900 0.66 0.397286
Target:  5'- aGGCCGCCG-CgCgCGGcgguccaggcgggcGGgGCGGGGGa -3'
miRNA:   3'- -CUGGUGGCuGgGgGCC--------------CCgCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 92883 0.67 0.391878
Target:  5'- cACCGCCcGCgCCCUGGaGCGCGGcGGcGg -3'
miRNA:   3'- cUGGUGGcUG-GGGGCCcCGCGCC-CC-C- -5'
30991 5' -67.8 NC_006560.1 + 90438 0.66 0.407455
Target:  5'- cGCC-CCGggcaagGCCCCCaagGGGGgGCGGGa- -3'
miRNA:   3'- cUGGuGGC------UGGGGG---CCCCgCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 137203 0.66 0.407455
Target:  5'- -cCCGCCGGCggCCGGGGaGCGGGc- -3'
miRNA:   3'- cuGGUGGCUGggGGCCCCgCGCCCcc -5'
30991 5' -67.8 NC_006560.1 + 19555 0.66 0.423414
Target:  5'- -uCCGgCGGcCCCCCGGaGGCGgcacCGGGcGGc -3'
miRNA:   3'- cuGGUgGCU-GGGGGCC-CCGC----GCCC-CC- -5'
30991 5' -67.8 NC_006560.1 + 75805 0.66 0.423414
Target:  5'- gGGCUGCUGGCCCUCucgcaGGC-CGGGGGc -3'
miRNA:   3'- -CUGGUGGCUGGGGGcc---CCGcGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 99148 0.66 0.422607
Target:  5'- -gUCGCCGGCCUcgCCGGGG-GCGGccgucccGGGc -3'
miRNA:   3'- cuGGUGGCUGGG--GGCCCCgCGCC-------CCC- -5'
30991 5' -67.8 NC_006560.1 + 20519 0.66 0.420996
Target:  5'- --gCACCGGCgCCUGGagccguucagaaccGGCgaggGCGGGGGg -3'
miRNA:   3'- cugGUGGCUGgGGGCC--------------CCG----CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 15845 0.66 0.420996
Target:  5'- -gUCGCCGACCaggaUcucguagucguacgCGGcGGCGUGGGGGc -3'
miRNA:   3'- cuGGUGGCUGGg---G--------------GCC-CCGCGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 150325 0.66 0.415387
Target:  5'- cGGCCccccgcGCCGcguuUCCCggCGGGGCgguucggcgGCGGGGGg -3'
miRNA:   3'- -CUGG------UGGCu---GGGG--GCCCCG---------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 131217 0.66 0.415387
Target:  5'- --gCGCCGGCCCgcgacgCCGGGGCuGCGGcugcuGGa -3'
miRNA:   3'- cugGUGGCUGGG------GGCCCCG-CGCCc----CC- -5'
30991 5' -67.8 NC_006560.1 + 47164 0.66 0.415387
Target:  5'- --gCGCCGAgCUCgCGaGGCGCGaGGGGg -3'
miRNA:   3'- cugGUGGCUgGGG-GCcCCGCGC-CCCC- -5'
30991 5' -67.8 NC_006560.1 + 33655 0.66 0.415387
Target:  5'- cGGCCGCgGGCCgcuuaggcgagCCCGgcGGGCgucuGCGGGGa -3'
miRNA:   3'- -CUGGUGgCUGG-----------GGGC--CCCG----CGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 54929 0.66 0.41459
Target:  5'- gGGCCGgggCGGCCaucgUCGGGGCucgcgcgccggcgGCGGGGGa -3'
miRNA:   3'- -CUGGUg--GCUGGg---GGCCCCG-------------CGCCCCC- -5'
30991 5' -67.8 NC_006560.1 + 4750 0.66 0.41459
Target:  5'- cGGCgG-CGGCCCgCGGcggcggcGGCGCGGGGu -3'
miRNA:   3'- -CUGgUgGCUGGGgGCC-------CCGCGCCCCc -5'
30991 5' -67.8 NC_006560.1 + 96081 0.66 0.412998
Target:  5'- uGAUCGCCGcggccggacgagccGCCCCCGcGGCGgCGGcGGc -3'
miRNA:   3'- -CUGGUGGC--------------UGGGGGCcCCGC-GCC-CCc -5'
30991 5' -67.8 NC_006560.1 + 66919 0.66 0.412998
Target:  5'- cGCCGCCGuCCgccgcggcccccgcCCCGGGGCGgGccuuGGGc -3'
miRNA:   3'- cUGGUGGCuGG--------------GGGCCCCGCgCc---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.