Results 121 - 140 of 306 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 125030 | 0.67 | 0.384236 |
Target: 5'- -cCCACCGGCggCUGGuGGCGCGGcGGu -3' miRNA: 3'- cuGGUGGCUGggGGCC-CCGCGCC-CCc -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 93368 | 0.67 | 0.384236 |
Target: 5'- cGCCucCCGugCCgUCGGGGgG-GGGGGc -3' miRNA: 3'- cUGGu-GGCugGG-GGCCCCgCgCCCCC- -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 2048 | 0.66 | 0.399618 |
Target: 5'- cGGCCGgCGGCCCagcgcaCGcGcGGCGCGGcggcGGGg -3' miRNA: 3'- -CUGGUgGCUGGGg-----GC-C-CCGCGCC----CCC- -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 104245 | 0.66 | 0.399618 |
Target: 5'- -cCCGaCGACCCCCGGGaccaaccucguGCuCGGGGa -3' miRNA: 3'- cuGGUgGCUGGGGGCCC-----------CGcGCCCCc -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 77004 | 0.66 | 0.406667 |
Target: 5'- cGCuCGCCGgggaccuGCCCCCGuGGGCGgucgacgaguucCGGGGc -3' miRNA: 3'- cUG-GUGGC-------UGGGGGC-CCCGC------------GCCCCc -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 150325 | 0.66 | 0.415387 |
Target: 5'- cGGCCccccgcGCCGcguuUCCCggCGGGGCgguucggcgGCGGGGGg -3' miRNA: 3'- -CUGG------UGGCu---GGGG--GCCCCG---------CGCCCCC- -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 131217 | 0.66 | 0.415387 |
Target: 5'- --gCGCCGGCCCgcgacgCCGGGGCuGCGGcugcuGGa -3' miRNA: 3'- cugGUGGCUGGG------GGCCCCG-CGCCc----CC- -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 47164 | 0.66 | 0.415387 |
Target: 5'- --gCGCCGAgCUCgCGaGGCGCGaGGGGg -3' miRNA: 3'- cugGUGGCUgGGG-GCcCCGCGC-CCCC- -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 33655 | 0.66 | 0.415387 |
Target: 5'- cGGCCGCgGGCCgcuuaggcgagCCCGgcGGGCgucuGCGGGGa -3' miRNA: 3'- -CUGGUGgCUGG-----------GGGC--CCCG----CGCCCCc -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 54929 | 0.66 | 0.41459 |
Target: 5'- gGGCCGgggCGGCCaucgUCGGGGCucgcgcgccggcgGCGGGGGa -3' miRNA: 3'- -CUGGUg--GCUGGg---GGCCCCG-------------CGCCCCC- -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 4750 | 0.66 | 0.41459 |
Target: 5'- cGGCgG-CGGCCCgCGGcggcggcGGCGCGGGGu -3' miRNA: 3'- -CUGgUgGCUGGGgGCC-------CCGCGCCCCc -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 96081 | 0.66 | 0.412998 |
Target: 5'- uGAUCGCCGcggccggacgagccGCCCCCGcGGCGgCGGcGGc -3' miRNA: 3'- -CUGGUGGC--------------UGGGGGCcCCGC-GCC-CCc -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 66919 | 0.66 | 0.412998 |
Target: 5'- cGCCGCCGuCCgccgcggcccccgcCCCGGGGCGgGccuuGGGc -3' miRNA: 3'- cUGGUGGCuGG--------------GGGCCCCGCgCc---CCC- -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 137203 | 0.66 | 0.407455 |
Target: 5'- -cCCGCCGGCggCCGGGGaGCGGGc- -3' miRNA: 3'- cuGGUGGCUGggGGCCCCgCGCCCcc -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 90438 | 0.66 | 0.407455 |
Target: 5'- cGCC-CCGggcaagGCCCCCaagGGGGgGCGGGa- -3' miRNA: 3'- cUGGuGGC------UGGGGG---CCCCgCGCCCcc -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 144236 | 0.66 | 0.407455 |
Target: 5'- -cCCGCCG-CCucuccuccugCCCGGGcccgcccgcguGCGCGGGGa -3' miRNA: 3'- cuGGUGGCuGG----------GGGCCC-----------CGCGCCCCc -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 139294 | 0.66 | 0.407455 |
Target: 5'- nGGgCACCggGugCCCCGugggcgccucGGGCGCGGGa- -3' miRNA: 3'- -CUgGUGG--CugGGGGC----------CCCGCGCCCcc -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 110437 | 0.66 | 0.407455 |
Target: 5'- gGGCCGCCGcCgCCCUGuGGGUGgCGGcGGc -3' miRNA: 3'- -CUGGUGGCuG-GGGGC-CCCGC-GCC-CCc -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 14613 | 0.66 | 0.407455 |
Target: 5'- cGCUugGCgCGGCCCUCGGGccCGCGGGcGGc -3' miRNA: 3'- cUGG--UG-GCUGGGGGCCCc-GCGCCC-CC- -5' |
|||||||
30991 | 5' | -67.8 | NC_006560.1 | + | 122011 | 0.66 | 0.407455 |
Target: 5'- aGACgCugCGGCUgcaCCGGGaGgGCGuGGGGa -3' miRNA: 3'- -CUG-GugGCUGGg--GGCCC-CgCGC-CCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home