miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30992 5' -50.1 NC_006560.1 + 118750 0.66 0.996404
Target:  5'- cGGCuGUCCCCGgc----GUcCAGGACg -3'
miRNA:   3'- -CCG-CAGGGGCacuuauUAaGUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 134481 0.66 0.996404
Target:  5'- cGCgGUCCCCGUcGuucuugcggcccagCAGGACCu -3'
miRNA:   3'- cCG-CAGGGGCA-Cuuauuaa-------GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 148549 0.66 0.996404
Target:  5'- uGGUGUCCCCGgcguuAUAugcgcCGGGAgCCc -3'
miRNA:   3'- -CCGCAGGGGCacu--UAUuaa--GUCCU-GG- -5'
30992 5' -50.1 NC_006560.1 + 125725 0.66 0.996227
Target:  5'- -aCGUCCUCGUGAccgaccggggAGGACCg -3'
miRNA:   3'- ccGCAGGGGCACUuauuaag---UCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 83232 0.66 0.996105
Target:  5'- gGGCGgcgCCCCGggcgccgcccucgccCGGGACCg -3'
miRNA:   3'- -CCGCa--GGGGCacuuauuaa------GUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 13586 0.67 0.995786
Target:  5'- gGGgGcCCCCGcgGAAgcgaUCGGGGCUc -3'
miRNA:   3'- -CCgCaGGGGCa-CUUauuaAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 146199 0.67 0.995786
Target:  5'- aGGCaGUCgCCCGUGAcggucuuguUGAggUAGGGCg -3'
miRNA:   3'- -CCG-CAG-GGGCACUu--------AUUaaGUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 113872 0.67 0.995786
Target:  5'- cGGCuUCaCCGUGGugcgc-CAGGACCg -3'
miRNA:   3'- -CCGcAGgGGCACUuauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 39370 0.67 0.995653
Target:  5'- cGGCGgCCCCGgcgc-----CGGGACCc -3'
miRNA:   3'- -CCGCaGGGGCacuuauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 37964 0.67 0.995585
Target:  5'- gGGCGUCCUcggCGUGccacgacgcguucaGAcAGUaCGGGGCCg -3'
miRNA:   3'- -CCGCAGGG---GCAC--------------UUaUUAaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 76096 0.67 0.995008
Target:  5'- uGGCGUgCCCGagcgaggacgcccUGGccgcGUGcgUCGGGGCg -3'
miRNA:   3'- -CCGCAgGGGC-------------ACU----UAUuaAGUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 120344 0.67 0.994289
Target:  5'- aGGCGUgccccugcgucaCCCCGUGcAUGu----GGGCCa -3'
miRNA:   3'- -CCGCA------------GGGGCACuUAUuaaguCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 57305 0.67 0.994289
Target:  5'- gGGCGUCCUCG--------UCGGGACa -3'
miRNA:   3'- -CCGCAGGGGCacuuauuaAGUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 15164 0.67 0.994289
Target:  5'- cGGCGUCUUCGcGG-----UCGGGAUCa -3'
miRNA:   3'- -CCGCAGGGGCaCUuauuaAGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 49314 0.67 0.994289
Target:  5'- cGCGUCgCCGUcGAUGAcgccgUCGGaGGCCc -3'
miRNA:   3'- cCGCAGgGGCAcUUAUUa----AGUC-CUGG- -5'
30992 5' -50.1 NC_006560.1 + 29059 0.67 0.993943
Target:  5'- cGCGUCUCCGgccgg----CGGGGCCc -3'
miRNA:   3'- cCGCAGGGGCacuuauuaaGUCCUGG- -5'
30992 5' -50.1 NC_006560.1 + 107560 0.67 0.993394
Target:  5'- -cCGUCCCuguggggguCGUGAGUAAUaaAGGACa -3'
miRNA:   3'- ccGCAGGG---------GCACUUAUUAagUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 5344 0.67 0.99239
Target:  5'- cGGCGUCCUCGgcgGGccGUcGUcCGGGuCCg -3'
miRNA:   3'- -CCGCAGGGGCa--CU--UAuUAaGUCCuGG- -5'
30992 5' -50.1 NC_006560.1 + 135596 0.67 0.99239
Target:  5'- gGGUG-CCCCGgccGcAGUGGUUcCGGGACg -3'
miRNA:   3'- -CCGCaGGGGCa--C-UUAUUAA-GUCCUGg -5'
30992 5' -50.1 NC_006560.1 + 40255 0.68 0.991268
Target:  5'- cGCGaUCCCCGacaGGAUGAUggagCAGcACCg -3'
miRNA:   3'- cCGC-AGGGGCa--CUUAUUAa---GUCcUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.