miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30993 5' -54.2 NC_006560.1 + 38528 0.66 0.951396
Target:  5'- -gGGGCcacaCCCAcggccgcgugcUCGAUCUCGGUCGu -3'
miRNA:   3'- uaCCCGcca-GGGU-----------AGCUAGAGUUAGU- -5'
30993 5' -54.2 NC_006560.1 + 28066 0.66 0.937765
Target:  5'- gGUGGGCGGUCCUGgggUGAg-UCGGUg- -3'
miRNA:   3'- -UACCCGCCAGGGUa--GCUagAGUUAgu -5'
30993 5' -54.2 NC_006560.1 + 14217 0.66 0.937765
Target:  5'- -cGGGCGGggcgCCCG-CGGUCgcggggaucgUCGAUCc -3'
miRNA:   3'- uaCCCGCCa---GGGUaGCUAG----------AGUUAGu -5'
30993 5' -54.2 NC_006560.1 + 466 0.66 0.93169
Target:  5'- -cGGGCGGccagucacccccgUCCCGgcccccgUCGGUCUCGcUCu -3'
miRNA:   3'- uaCCCGCC-------------AGGGU-------AGCUAGAGUuAGu -5'
30993 5' -54.2 NC_006560.1 + 28104 0.7 0.783146
Target:  5'- cGUGGGUGGUCCCGccugCGGUCcuggggUgAGUCGg -3'
miRNA:   3'- -UACCCGCCAGGGUa---GCUAG------AgUUAGU- -5'
30993 5' -54.2 NC_006560.1 + 53768 0.71 0.724407
Target:  5'- -gGGGCGG-CCCGUCGGUCgCGGc-- -3'
miRNA:   3'- uaCCCGCCaGGGUAGCUAGaGUUagu -5'
30993 5' -54.2 NC_006560.1 + 148912 0.72 0.693785
Target:  5'- cUGGGCGGgCgCAUCGAUUuuUUAAUCAg -3'
miRNA:   3'- uACCCGCCaGgGUAGCUAG--AGUUAGU- -5'
30993 5' -54.2 NC_006560.1 + 45143 0.78 0.370704
Target:  5'- -gGGGCGGUCCCGUCaGAUCcCGGUgGa -3'
miRNA:   3'- uaCCCGCCAGGGUAG-CUAGaGUUAgU- -5'
30993 5' -54.2 NC_006560.1 + 148846 1.07 0.00503
Target:  5'- gAUGGGCGGUCCCAUCGAUCUCAAUCAg -3'
miRNA:   3'- -UACCCGCCAGGGUAGCUAGAGUUAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.