miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30994 3' -56.4 NC_006560.1 + 139240 0.67 0.860869
Target:  5'- cGUGGUcgGGGUccggcgcCCGGaCCCCCGGG-GGCg -3'
miRNA:   3'- -CGCCA--UCUAu------GGUC-GGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 142566 0.67 0.853159
Target:  5'- cGCGGgcc--GCCGGCCucuCCCGAGcgGACc -3'
miRNA:   3'- -CGCCaucuaUGGUCGG---GGGCUCa-CUG- -5'
30994 3' -56.4 NC_006560.1 + 81476 0.67 0.853159
Target:  5'- aGCGGgggGGAgcGCCGGCCCCgCGGccucGACc -3'
miRNA:   3'- -CGCCa--UCUa-UGGUCGGGG-GCUca--CUG- -5'
30994 3' -56.4 NC_006560.1 + 42646 0.67 0.853159
Target:  5'- gGCGGcgaacGCCuGCCCCCGGGgcgccaUGGCg -3'
miRNA:   3'- -CGCCaucuaUGGuCGGGGGCUC------ACUG- -5'
30994 3' -56.4 NC_006560.1 + 12715 0.67 0.84525
Target:  5'- gGgGGUGGggGCgGGgCCCUGgauGGUGACg -3'
miRNA:   3'- -CgCCAUCuaUGgUCgGGGGC---UCACUG- -5'
30994 3' -56.4 NC_006560.1 + 149474 0.67 0.84525
Target:  5'- gGCGGcAGAcgGCCGGCggCCCGGGccGACg -3'
miRNA:   3'- -CGCCaUCUa-UGGUCGg-GGGCUCa-CUG- -5'
30994 3' -56.4 NC_006560.1 + 123432 0.67 0.837149
Target:  5'- cGCGG-----GCCGGCCCCUGGGccacGACu -3'
miRNA:   3'- -CGCCaucuaUGGUCGGGGGCUCa---CUG- -5'
30994 3' -56.4 NC_006560.1 + 103213 0.67 0.837149
Target:  5'- aCGGUAGcgACgAcGUCCCCG-GUGAUc -3'
miRNA:   3'- cGCCAUCuaUGgU-CGGGGGCuCACUG- -5'
30994 3' -56.4 NC_006560.1 + 101285 0.67 0.835506
Target:  5'- aGCGccgccugGCgGGCCCCCGAG-GACa -3'
miRNA:   3'- -CGCcaucua-UGgUCGGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 18286 0.67 0.832199
Target:  5'- uGCGGcAG-UGCCggauccuggcggcggAGCCCCUGGG-GACg -3'
miRNA:   3'- -CGCCaUCuAUGG---------------UCGGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 120069 0.67 0.828863
Target:  5'- cGCGGggcccuaccuGGUGCCcgcggaGGUCCCCGGG-GACc -3'
miRNA:   3'- -CGCCau--------CUAUGG------UCGGGGGCUCaCUG- -5'
30994 3' -56.4 NC_006560.1 + 142630 0.67 0.828863
Target:  5'- cGCGGgcccAGAUG--GGCCCCCGAGg--- -3'
miRNA:   3'- -CGCCa---UCUAUggUCGGGGGCUCacug -5'
30994 3' -56.4 NC_006560.1 + 149824 0.68 0.820399
Target:  5'- gGCGGaGGcgGCCucgcGGCCCCCGGccgcgGGCg -3'
miRNA:   3'- -CGCCaUCuaUGG----UCGGGGGCUca---CUG- -5'
30994 3' -56.4 NC_006560.1 + 55299 0.68 0.820399
Target:  5'- cGCGGUGGucaccUGCUGGCCCaCgGGGUcGCg -3'
miRNA:   3'- -CGCCAUCu----AUGGUCGGG-GgCUCAcUG- -5'
30994 3' -56.4 NC_006560.1 + 125121 0.68 0.80297
Target:  5'- -gGGUcAGGUGCCcGgCCCCGAGgaGGCg -3'
miRNA:   3'- cgCCA-UCUAUGGuCgGGGGCUCa-CUG- -5'
30994 3' -56.4 NC_006560.1 + 103754 0.68 0.80297
Target:  5'- uGCGGccGGGUccuUCGGCCUCCGAGacgGGCg -3'
miRNA:   3'- -CGCCa-UCUAu--GGUCGGGGGCUCa--CUG- -5'
30994 3' -56.4 NC_006560.1 + 78084 0.68 0.794021
Target:  5'- cGCGGcgcucGGggGCCucgacGGCCCCCGggcgcuGGUGGCg -3'
miRNA:   3'- -CGCCa----UCuaUGG-----UCGGGGGC------UCACUG- -5'
30994 3' -56.4 NC_006560.1 + 126965 0.68 0.784926
Target:  5'- cGCaGGUAGGUcccGCuCAGCaccCCCCGGGUG-Ca -3'
miRNA:   3'- -CG-CCAUCUA---UG-GUCG---GGGGCUCACuG- -5'
30994 3' -56.4 NC_006560.1 + 125832 0.68 0.775696
Target:  5'- uGCgGGUGGugACgCAGCCCCCGAGc--- -3'
miRNA:   3'- -CG-CCAUCuaUG-GUCGGGGGCUCacug -5'
30994 3' -56.4 NC_006560.1 + 144100 0.69 0.766337
Target:  5'- cUGGUGGucuccGCCGGCCCCUGccUGGCu -3'
miRNA:   3'- cGCCAUCua---UGGUCGGGGGCucACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.