Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30996 | 3' | -57.5 | NC_006560.1 | + | 90343 | 0.66 | 0.870016 |
Target: 5'- -gACGCCGUCGcGCGGGcGGccgcCCAc- -3' miRNA: 3'- agUGCGGCAGC-CGCCCuUCua--GGUcu -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 129445 | 0.66 | 0.870016 |
Target: 5'- -uGCGCUGggacUCGGCGGcGggGggCuCGGAg -3' miRNA: 3'- agUGCGGC----AGCCGCC-CuuCuaG-GUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 94822 | 0.66 | 0.872902 |
Target: 5'- aCGCGCuccuCGUCGGgGGGcaggcgaccucgcccGAGGaCCAGAu -3' miRNA: 3'- aGUGCG----GCAGCCgCCC---------------UUCUaGGUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 15742 | 0.66 | 0.877168 |
Target: 5'- gCACGCCGggGGCgcgcgcguccgGGGgcGAcUCCGGGc -3' miRNA: 3'- aGUGCGGCagCCG-----------CCCuuCU-AGGUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 97052 | 0.66 | 0.877168 |
Target: 5'- gCACGCUGaccaagUGGCGGGAGGuggaCgAGAu -3' miRNA: 3'- aGUGCGGCa-----GCCGCCCUUCua--GgUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 100889 | 0.66 | 0.855099 |
Target: 5'- cCGCGCCaacugagccCGGUGGGAAGGccgaCCGGGu -3' miRNA: 3'- aGUGCGGca-------GCCGCCCUUCUa---GGUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 106199 | 0.66 | 0.855099 |
Target: 5'- uUCugGCgGcUGGCGGcGAGGAucgccacgUCCGGGc -3' miRNA: 3'- -AGugCGgCaGCCGCC-CUUCU--------AGGUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 34655 | 0.66 | 0.839401 |
Target: 5'- aCGCGCgG-CGGcCGGGcGGGUCgCGGGg -3' miRNA: 3'- aGUGCGgCaGCC-GCCCuUCUAG-GUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 130458 | 0.66 | 0.839401 |
Target: 5'- cCGCGCgCGUCGGCcGGGAcccccgcaCCGGGc -3' miRNA: 3'- aGUGCG-GCAGCCG-CCCUucua----GGUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 15047 | 0.66 | 0.846558 |
Target: 5'- cUCGCGCCGgggggcgacggcgUCGGUGGGggG--CgGGGg -3' miRNA: 3'- -AGUGCGGC-------------AGCCGCCCuuCuaGgUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 27371 | 0.66 | 0.847344 |
Target: 5'- cCcCGCCGggaaacgCGGCGcGGggGG-CCGGGc -3' miRNA: 3'- aGuGCGGCa------GCCGC-CCuuCUaGGUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 89306 | 0.66 | 0.847344 |
Target: 5'- ---gGCCGUuccCGGCGGGAccucAGAcggCCGGGg -3' miRNA: 3'- agugCGGCA---GCCGCCCU----UCUa--GGUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 99827 | 0.66 | 0.847344 |
Target: 5'- gCugGuuGUagugGGCGGccgGGAUCCAGAg -3' miRNA: 3'- aGugCggCAg---CCGCCcu-UCUAGGUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 117550 | 0.66 | 0.847344 |
Target: 5'- aCACGCCcugaCGGCGGGcGGcgCCGc- -3' miRNA: 3'- aGUGCGGca--GCCGCCCuUCuaGGUcu -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 128177 | 0.66 | 0.847344 |
Target: 5'- uUCACGUgGUCGuCGGGGAGuacgCCAc- -3' miRNA: 3'- -AGUGCGgCAGCcGCCCUUCua--GGUcu -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 95037 | 0.66 | 0.847344 |
Target: 5'- -gGCGCCG-CGGcCGGGGAG--CCGGc -3' miRNA: 3'- agUGCGGCaGCC-GCCCUUCuaGGUCu -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 124139 | 0.66 | 0.847344 |
Target: 5'- gUCGCGgCGcCGGCGgGGGAGG-CCGa- -3' miRNA: 3'- -AGUGCgGCaGCCGC-CCUUCUaGGUcu -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 9286 | 0.66 | 0.855099 |
Target: 5'- gCGCGCC-UCGG-GGGAccacGGGUCCGc- -3' miRNA: 3'- aGUGCGGcAGCCgCCCU----UCUAGGUcu -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 66509 | 0.66 | 0.855099 |
Target: 5'- gCGCGCCccgguaGUUGGCGGuGAcGugcGUCCGGAc -3' miRNA: 3'- aGUGCGG------CAGCCGCC-CUuC---UAGGUCU- -5' |
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30996 | 3' | -57.5 | NC_006560.1 | + | 1632 | 0.66 | 0.855099 |
Target: 5'- uUCGCGCCuGUCuguGGCGGGG----CCGGGg -3' miRNA: 3'- -AGUGCGG-CAG---CCGCCCUucuaGGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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