miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30996 5' -51.4 NC_006560.1 + 42408 0.66 0.99268
Target:  5'- --gCAcGACGUucgucaccgccaggCCGCCguugaagaucucguuGCGGUUCGCGu -3'
miRNA:   3'- gaaGUuUUGCA--------------GGCGG---------------UGCCAAGCGC- -5'
30996 5' -51.4 NC_006560.1 + 28482 0.66 0.993556
Target:  5'- -cUCGAcg-GUCCGCCcCGGgcCGCGc -3'
miRNA:   3'- gaAGUUuugCAGGCGGuGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 127280 0.66 0.988917
Target:  5'- -cUCGGGGCGUCCaGgUGCGGgggUGCGg -3'
miRNA:   3'- gaAGUUUUGCAGG-CgGUGCCaa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 107990 0.66 0.988917
Target:  5'- --cCGGGACGUCgGCCG-GGUcgUCGCc -3'
miRNA:   3'- gaaGUUUUGCAGgCGGUgCCA--AGCGc -5'
30996 5' -51.4 NC_006560.1 + 43746 0.67 0.979874
Target:  5'- ------cGCGgCCGCCGCGGUgCGCc -3'
miRNA:   3'- gaaguuuUGCaGGCGGUGCCAaGCGc -5'
30996 5' -51.4 NC_006560.1 + 133251 0.67 0.979874
Target:  5'- --gCGAcACGcCCGUCGCGGUgaaccggacgUCGCGc -3'
miRNA:   3'- gaaGUUuUGCaGGCGGUGCCA----------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 51405 0.67 0.979874
Target:  5'- -cUCAAcGCGgugcuggUCGCCGCGGUcuaCGCGc -3'
miRNA:   3'- gaAGUUuUGCa------GGCGGUGCCAa--GCGC- -5'
30996 5' -51.4 NC_006560.1 + 42917 0.67 0.982018
Target:  5'- --aCGAgucGACGg-CGCCGCGGUagCGCGg -3'
miRNA:   3'- gaaGUU---UUGCagGCGGUGCCAa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 114658 0.67 0.982018
Target:  5'- gUUC-AAACGcCCGCC-CGGgugcCGCGa -3'
miRNA:   3'- gAAGuUUUGCaGGCGGuGCCaa--GCGC- -5'
30996 5' -51.4 NC_006560.1 + 128647 0.67 0.982018
Target:  5'- ----cGGACGcUCCGCCGCGGggagcugcUCGUGu -3'
miRNA:   3'- gaaguUUUGC-AGGCGGUGCCa-------AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 82767 0.67 0.983986
Target:  5'- -gUCGAGgucgggggcccgGCGcCCGCgCGCGGgcgCGCGg -3'
miRNA:   3'- gaAGUUU------------UGCaGGCG-GUGCCaa-GCGC- -5'
30996 5' -51.4 NC_006560.1 + 106409 0.67 0.985785
Target:  5'- -cUCGAGGCGcgCCucgggcggcugGCCGCGGaggcggUCGCGg -3'
miRNA:   3'- gaAGUUUUGCa-GG-----------CGGUGCCa-----AGCGC- -5'
30996 5' -51.4 NC_006560.1 + 144331 0.67 0.985785
Target:  5'- -cUCuccGCGgccCCGCCGCGGg-CGCGa -3'
miRNA:   3'- gaAGuuuUGCa--GGCGGUGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 39614 0.67 0.987426
Target:  5'- --gCGGAGCG-CCGCgGCGGgcgUCgGCGu -3'
miRNA:   3'- gaaGUUUUGCaGGCGgUGCCa--AG-CGC- -5'
30996 5' -51.4 NC_006560.1 + 70568 0.66 0.988917
Target:  5'- ------cGCGUUCGUCACGGU-CGCc -3'
miRNA:   3'- gaaguuuUGCAGGCGGUGCCAaGCGc -5'
30996 5' -51.4 NC_006560.1 + 18606 0.66 0.988917
Target:  5'- ---aGGGACGcCCGCguCGGcgCGCGg -3'
miRNA:   3'- gaagUUUUGCaGGCGguGCCaaGCGC- -5'
30996 5' -51.4 NC_006560.1 + 70704 0.66 0.993556
Target:  5'- ------cGCG-CCGCCACGGgcccccggCGCGu -3'
miRNA:   3'- gaaguuuUGCaGGCGGUGCCaa------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.