Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30997 | 3' | -59.5 | NC_006560.1 | + | 86398 | 0.66 | 0.761617 |
Target: 5'- gUGGaGgcaGGGCAGCAggccgugcuGCACGCCCgUGa -3' miRNA: 3'- -ACCaCaa-CUCGUCGU---------CGUGCGGGgGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 35390 | 0.66 | 0.761617 |
Target: 5'- aGGgGggGAGCuccAGCGGCcggcgccggccGCGCCCgCCGc -3' miRNA: 3'- aCCaCaaCUCG---UCGUCG-----------UGCGGG-GGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 9264 | 0.66 | 0.761617 |
Target: 5'- aGGUGacGAggucGCGGCcccGGCGCGCCUCgGg -3' miRNA: 3'- aCCACaaCU----CGUCG---UCGUGCGGGGgC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 76502 | 0.66 | 0.761617 |
Target: 5'- cUGGcug-GAGCAcgcGCGGCGCGUCUUCGg -3' miRNA: 3'- -ACCacaaCUCGU---CGUCGUGCGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 146832 | 0.66 | 0.761617 |
Target: 5'- gGGUGUgggcgugcuGCGGCGGCGCggggcggggcgGCgCCCGg -3' miRNA: 3'- aCCACAacu------CGUCGUCGUG-----------CGgGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 15956 | 0.66 | 0.742637 |
Target: 5'- -cGUGUggGAGUacGGCcGCACGUgCCCGg -3' miRNA: 3'- acCACAa-CUCG--UCGuCGUGCGgGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 115093 | 0.66 | 0.742637 |
Target: 5'- gUGGUGUuucUGccgacgauccGGCGGCAGCugGCgCUggCCGa -3' miRNA: 3'- -ACCACA---AC----------UCGUCGUCGugCG-GG--GGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 66452 | 0.66 | 0.709545 |
Target: 5'- gGGUGUgaaccaUGgcccgcaggcacucGGcCAGCgcguccaGGCGCGCCCCCGc -3' miRNA: 3'- aCCACA------AC--------------UC-GUCG-------UCGUGCGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 127089 | 0.66 | 0.709545 |
Target: 5'- cGGUGaccuGCAGCAGCcagaggcaggcguUGCCCCCc -3' miRNA: 3'- aCCACaacuCGUCGUCGu------------GCGGGGGc -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 127401 | 0.66 | 0.7125 |
Target: 5'- cGGcGaUGAGCAGCcccaggagacagAGCacggagacgacgaACGCCCCCa -3' miRNA: 3'- aCCaCaACUCGUCG------------UCG-------------UGCGGGGGc -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 124923 | 0.66 | 0.713483 |
Target: 5'- cGGcUGccUGAGCcccaccccCGGCACGCCCCUGc -3' miRNA: 3'- aCC-ACa-ACUCGuc------GUCGUGCGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 70662 | 0.66 | 0.713483 |
Target: 5'- cUGGcgcgcuGGCGGCGGCugGCCgCCGc -3' miRNA: 3'- -ACCacaac-UCGUCGUCGugCGGgGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 52542 | 0.66 | 0.722304 |
Target: 5'- gGGcGUcGAGCGGCGGCcucugccGCGCCauCCUGg -3' miRNA: 3'- aCCaCAaCUCGUCGUCG-------UGCGG--GGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 63707 | 0.66 | 0.723281 |
Target: 5'- gUGGaagcUGgaGAGguGCAuGC-CGCCCCUGu -3' miRNA: 3'- -ACC----ACaaCUCguCGU-CGuGCGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 34355 | 0.66 | 0.733001 |
Target: 5'- gGGuUGggGAGgAGgGGgGCGCCCgCCGc -3' miRNA: 3'- aCC-ACaaCUCgUCgUCgUGCGGG-GGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 87871 | 0.66 | 0.733001 |
Target: 5'- cGGUGgggcgcGGGUggGGgGGCGCGCCguCCCGg -3' miRNA: 3'- aCCACaa----CUCG--UCgUCGUGCGG--GGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 95928 | 0.66 | 0.733001 |
Target: 5'- cGGUccu--GCAGCAcCugGCCCCCa -3' miRNA: 3'- aCCAcaacuCGUCGUcGugCGGGGGc -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 116417 | 0.66 | 0.733001 |
Target: 5'- aGGaagaagGGGUagAGCAcCGCGCCCCCGg -3' miRNA: 3'- aCCacaa--CUCG--UCGUcGUGCGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 78391 | 0.66 | 0.733001 |
Target: 5'- cUGGUGcUG-GCGGC--CACGCUCCUGg -3' miRNA: 3'- -ACCACaACuCGUCGucGUGCGGGGGC- -5' |
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30997 | 3' | -59.5 | NC_006560.1 | + | 131164 | 0.66 | 0.733001 |
Target: 5'- cGGcucUGGGCGGCGGC-CGCCgcgggggcgCCCGg -3' miRNA: 3'- aCCacaACUCGUCGUCGuGCGG---------GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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