miRNA display CGI


Results 1 - 20 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 3' -68.8 NC_006560.1 + 138689 1.1 0.000241
Target:  5'- cCCCCCUCCCCCGCCCCGCGGCGACCCc -3'
miRNA:   3'- -GGGGGAGGGGGCGGGGCGCCGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 142022 0.89 0.009424
Target:  5'- cCCCCCggcUCCCCCGCCCCGCGGCcccuccuCCCg -3'
miRNA:   3'- -GGGGG---AGGGGGCGGGGCGCCGcu-----GGG- -5'
30999 3' -68.8 NC_006560.1 + 143311 0.89 0.010159
Target:  5'- gCCCCacCCCCCcCCCCGCGGCGACCCc -3'
miRNA:   3'- gGGGGa-GGGGGcGGGGCGCCGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 7169 0.88 0.011804
Target:  5'- cCCCCCUcCCCCCGcCCCCGCGggcccGCGGCCCc -3'
miRNA:   3'- -GGGGGA-GGGGGC-GGGGCGC-----CGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 72752 0.87 0.013375
Target:  5'- cCCCCCUCCCCaCGgcggacccccuCCCCGCGGCgGACCCc -3'
miRNA:   3'- -GGGGGAGGGG-GC-----------GGGGCGCCG-CUGGG- -5'
30999 3' -68.8 NC_006560.1 + 46581 0.85 0.019935
Target:  5'- aCCCCCUCCCCC-CCgCCGCGGaCGuCCCu -3'
miRNA:   3'- -GGGGGAGGGGGcGG-GGCGCC-GCuGGG- -5'
30999 3' -68.8 NC_006560.1 + 147196 0.84 0.020797
Target:  5'- uCCCCCUCCCCCGCCggaggcgcggggggCCGgGGCGccuCCCg -3'
miRNA:   3'- -GGGGGAGGGGGCGG--------------GGCgCCGCu--GGG- -5'
30999 3' -68.8 NC_006560.1 + 3919 0.84 0.023145
Target:  5'- uCCCCCUCCUCCGCCgCgGgGGCGGCgCCg -3'
miRNA:   3'- -GGGGGAGGGGGCGG-GgCgCCGCUG-GG- -5'
30999 3' -68.8 NC_006560.1 + 144314 0.83 0.025563
Target:  5'- cCCCCCUCuCCCCGCCCCuCuccGCGGCCCc -3'
miRNA:   3'- -GGGGGAG-GGGGCGGGGcGc--CGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 24053 0.83 0.028229
Target:  5'- cCCgCCCgcgCCCCCGgCCCGCGGCGcucaccGCCCg -3'
miRNA:   3'- -GG-GGGa--GGGGGCgGGGCGCCGC------UGGG- -5'
30999 3' -68.8 NC_006560.1 + 66927 0.82 0.028938
Target:  5'- uCCgCCgcggCCCCCGCCCCGgGGCGGgCCu -3'
miRNA:   3'- -GGgGGa---GGGGGCGGGGCgCCGCUgGG- -5'
30999 3' -68.8 NC_006560.1 + 142919 0.82 0.029664
Target:  5'- aCCCCgcagCCCCCGacaCCUGCgGGCGACCCu -3'
miRNA:   3'- gGGGGa---GGGGGCg--GGGCG-CCGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 160 0.82 0.030408
Target:  5'- gUCCCggCCCCGCCCCGCGGUcccGGCCCc -3'
miRNA:   3'- gGGGGagGGGGCGGGGCGCCG---CUGGG- -5'
30999 3' -68.8 NC_006560.1 + 150489 0.82 0.030408
Target:  5'- gUCCCggCCCCGCCCCGCGGUcccGGCCCc -3'
miRNA:   3'- gGGGGagGGGGCGGGGCGCCG---CUGGG- -5'
30999 3' -68.8 NC_006560.1 + 74006 0.82 0.031951
Target:  5'- gCCCCgCCCCCgcucgccacgaGCCCCGCGGCcGACCUg -3'
miRNA:   3'- gGGGGaGGGGG-----------CGGGGCGCCG-CUGGG- -5'
30999 3' -68.8 NC_006560.1 + 25411 0.81 0.034412
Target:  5'- gCCCCgCCCCCGCCCUGgGgggcGCGACCCc -3'
miRNA:   3'- gGGGGaGGGGGCGGGGCgC----CGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 79405 0.81 0.034753
Target:  5'- aCCCCCUCCCgaCCGCCCCaccccccgagcaaccGCGGgaCGACCCc -3'
miRNA:   3'- -GGGGGAGGG--GGCGGGG---------------CGCC--GCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 24457 0.81 0.035623
Target:  5'- uCCCCCg-CCCCGCCCgccuggaccgccgcgCGCGGCGGCCUc -3'
miRNA:   3'- -GGGGGagGGGGCGGG---------------GCGCCGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 29796 0.81 0.037984
Target:  5'- uCCCCCgCCCCCGCCCCGCGaggucuGCG-CCg -3'
miRNA:   3'- -GGGGGaGGGGGCGGGGCGC------CGCuGGg -5'
30999 3' -68.8 NC_006560.1 + 44889 0.81 0.038932
Target:  5'- gCCCCCgucaCCCCCGCgguCCCgGCGGCGaACCCc -3'
miRNA:   3'- -GGGGGa---GGGGGCG---GGG-CGCCGC-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.