miRNA display CGI


Results 21 - 40 of 563 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30999 3' -68.8 NC_006560.1 + 56463 0.66 0.415874
Target:  5'- gCCCUCggcgcgCCCUCGCCCgCGCacaGGagccacaucagcaGGCCCa -3'
miRNA:   3'- -GGGGGa-----GGGGGCGGG-GCG---CCg------------CUGGG- -5'
30999 3' -68.8 NC_006560.1 + 13003 0.66 0.411151
Target:  5'- uCCaCCgUCacgCCCCGCUcaaagaccgggCCGCGGCGGCaggCCg -3'
miRNA:   3'- -GG-GGgAG---GGGGCGG-----------GGCGCCGCUG---GG- -5'
30999 3' -68.8 NC_006560.1 + 93838 0.66 0.411151
Target:  5'- gCCCUgcaggUUCgCGCCgUGCGGCGGCgCCu -3'
miRNA:   3'- gGGGGa----GGGgGCGGgGCGCCGCUG-GG- -5'
30999 3' -68.8 NC_006560.1 + 45175 0.66 0.411151
Target:  5'- aCCCC-CCCgUGCCCCGUucgcugGGCGGg-- -3'
miRNA:   3'- gGGGGaGGGgGCGGGGCG------CCGCUggg -5'
30999 3' -68.8 NC_006560.1 + 142705 0.66 0.411151
Target:  5'- gCCCggCCggCCgCgGCCCCGaGGCG-CCCg -3'
miRNA:   3'- -GGG--GGa-GGgGgCGGGGCgCCGCuGGG- -5'
30999 3' -68.8 NC_006560.1 + 56670 0.66 0.410368
Target:  5'- aCCCCC-CCauuuauaCCCGCCCgaccccaccaCGgGG-GGCCCg -3'
miRNA:   3'- -GGGGGaGG-------GGGCGGG----------GCgCCgCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 55798 0.66 0.408803
Target:  5'- gCCaCCUCgUCgCCGCCCUcgaaccagcggaagGCGGCGccgucGCCCg -3'
miRNA:   3'- gGG-GGAG-GG-GGCGGGG--------------CGCCGC-----UGGG- -5'
30999 3' -68.8 NC_006560.1 + 7491 0.66 0.406462
Target:  5'- aCCCCCgggggugaggacggCCCCC-UCCCGgGGguucaCGACUCg -3'
miRNA:   3'- -GGGGGa-------------GGGGGcGGGGCgCC-----GCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 102906 0.66 0.403355
Target:  5'- cUCUCCggcgCuCCUCGCCCuCGCGgGgGACCg -3'
miRNA:   3'- -GGGGGa---G-GGGGCGGG-GCGC-CgCUGGg -5'
30999 3' -68.8 NC_006560.1 + 120873 0.66 0.403355
Target:  5'- gUCUCUCCCuuGa--CGUGGuCGACCCg -3'
miRNA:   3'- gGGGGAGGGggCgggGCGCC-GCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 5331 0.66 0.403355
Target:  5'- gCCCCUCCggguCCgGCgUCCuCGGCGGgCCg -3'
miRNA:   3'- gGGGGAGG----GGgCG-GGGcGCCGCUgGG- -5'
30999 3' -68.8 NC_006560.1 + 8240 0.66 0.403355
Target:  5'- uUCCCUCCCCCcaacGCgaCCGU-GCGcCCCg -3'
miRNA:   3'- gGGGGAGGGGG----CGg-GGCGcCGCuGGG- -5'
30999 3' -68.8 NC_006560.1 + 120465 0.66 0.403355
Target:  5'- gCUCggCUCCaCCCGCgggCCGCGcaucGCGGCCCa -3'
miRNA:   3'- gGGG--GAGG-GGGCGg--GGCGC----CGCUGGG- -5'
30999 3' -68.8 NC_006560.1 + 21866 0.66 0.403355
Target:  5'- gCCgCCgaCCCUCGCCgcgaCCGCcGCcGACCCu -3'
miRNA:   3'- -GG-GGgaGGGGGCGG----GGCGcCG-CUGGG- -5'
30999 3' -68.8 NC_006560.1 + 22113 0.66 0.403355
Target:  5'- gCCgCCgCCgCCgCGUCCuCGCGGCagcuGGCCCu -3'
miRNA:   3'- -GGgGGaGG-GG-GCGGG-GCGCCG----CUGGG- -5'
30999 3' -68.8 NC_006560.1 + 52015 0.66 0.403355
Target:  5'- gCCCCgCCaCCaCGCCCCGCcaccaCGcCCCg -3'
miRNA:   3'- gGGGGaGG-GG-GCGGGGCGcc---GCuGGG- -5'
30999 3' -68.8 NC_006560.1 + 52054 0.66 0.403355
Target:  5'- gCCCCgCCaCCaCGCCCCGCcaccaCGcCCCg -3'
miRNA:   3'- gGGGGaGG-GG-GCGGGGCGcc---GCuGGG- -5'
30999 3' -68.8 NC_006560.1 + 114746 0.66 0.403355
Target:  5'- nCCgCCCUgCUgCGCaaguaCCgCGCGGCGACgCCc -3'
miRNA:   3'- -GG-GGGAgGGgGCG-----GG-GCGCCGCUG-GG- -5'
30999 3' -68.8 NC_006560.1 + 31412 0.66 0.403355
Target:  5'- aCgCCgaCCgCGcCCCCGCGGCGuccgGCCCc -3'
miRNA:   3'- gGgGGagGGgGC-GGGGCGCCGC----UGGG- -5'
30999 3' -68.8 NC_006560.1 + 67665 0.66 0.40258
Target:  5'- gCgCCUCCCCCgaaagaaucucggGCCgCCGCGcCGcCCCc -3'
miRNA:   3'- gGgGGAGGGGG-------------CGG-GGCGCcGCuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.