miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3100 3' -61 NC_001493.1 + 111759 0.66 0.734862
Target:  5'- aCCCGUGaUCACca--CGGGCGgUCCCGa -3'
miRNA:   3'- -GGGUAC-AGUGccugGCCUGCgGGGGC- -5'
3100 3' -61 NC_001493.1 + 111168 0.66 0.734862
Target:  5'- gCUCAgGUCACGG-CCGGucuCGacaUCCCGa -3'
miRNA:   3'- -GGGUaCAGUGCCuGGCCu--GCg--GGGGC- -5'
3100 3' -61 NC_001493.1 + 93330 0.66 0.725458
Target:  5'- aCCg---CGCGGACCGGuGCGCUcguaucgaCCCGg -3'
miRNA:   3'- gGGuacaGUGCCUGGCC-UGCGG--------GGGC- -5'
3100 3' -61 NC_001493.1 + 89567 0.66 0.725458
Target:  5'- gUCCGcacgGUCACGaGACCgaacgucgugacGGGCGCCguuuuCCCGg -3'
miRNA:   3'- -GGGUa---CAGUGC-CUGG------------CCUGCGG-----GGGC- -5'
3100 3' -61 NC_001493.1 + 13363 0.66 0.725458
Target:  5'- gCCCGaccUG-UACGGuuCCGGAcCGCUCCCc -3'
miRNA:   3'- -GGGU---ACaGUGCCu-GGCCU-GCGGGGGc -5'
3100 3' -61 NC_001493.1 + 128917 0.66 0.725458
Target:  5'- gCCCGaccUG-UACGGuuCCGGAcCGCUCCCc -3'
miRNA:   3'- -GGGU---ACaGUGCCu-GGCCU-GCGGGGGc -5'
3100 3' -61 NC_001493.1 + 27618 0.66 0.715981
Target:  5'- aCCCg---CGCGGGCuCGGGauCGgCCCCGa -3'
miRNA:   3'- -GGGuacaGUGCCUG-GCCU--GCgGGGGC- -5'
3100 3' -61 NC_001493.1 + 89222 0.66 0.706439
Target:  5'- uUCCGgcucGUCAUGGAgCGcGGCGUCCUCc -3'
miRNA:   3'- -GGGUa---CAGUGCCUgGC-CUGCGGGGGc -5'
3100 3' -61 NC_001493.1 + 88339 0.66 0.706439
Target:  5'- gCCAg--C-CGGuaccCCGGGCGUCCCCa -3'
miRNA:   3'- gGGUacaGuGCCu---GGCCUGCGGGGGc -5'
3100 3' -61 NC_001493.1 + 80668 0.66 0.706438
Target:  5'- gCUCAUGUCACGGGgaCGGAcaaCGUgUCCa -3'
miRNA:   3'- -GGGUACAGUGCCUg-GCCU---GCGgGGGc -5'
3100 3' -61 NC_001493.1 + 112466 0.66 0.706438
Target:  5'- gUCCAaggcgGUCuCGGACCGGugcCGCUCCa- -3'
miRNA:   3'- -GGGUa----CAGuGCCUGGCCu--GCGGGGgc -5'
3100 3' -61 NC_001493.1 + 20593 0.66 0.696838
Target:  5'- aCCGUGUCGC-GACCGG-CGCaugaaggaaCUCGg -3'
miRNA:   3'- gGGUACAGUGcCUGGCCuGCGg--------GGGC- -5'
3100 3' -61 NC_001493.1 + 36967 0.66 0.687189
Target:  5'- cCCCAUG--ACGGGcuacCCGuuCGCCCCCc -3'
miRNA:   3'- -GGGUACagUGCCU----GGCcuGCGGGGGc -5'
3100 3' -61 NC_001493.1 + 17767 0.66 0.687189
Target:  5'- uCCCGggGUCGgGGccgcaACgCGGGCGUgCCCGg -3'
miRNA:   3'- -GGGUa-CAGUgCC-----UG-GCCUGCGgGGGC- -5'
3100 3' -61 NC_001493.1 + 133321 0.66 0.687189
Target:  5'- uCCCGggGUCGgGGccgcaACgCGGGCGUgCCCGg -3'
miRNA:   3'- -GGGUa-CAGUgCC-----UG-GCCUGCGgGGGC- -5'
3100 3' -61 NC_001493.1 + 29131 0.67 0.667772
Target:  5'- uCCUuuuugGUC-CGGGCCG--UGCCCCCGc -3'
miRNA:   3'- -GGGua---CAGuGCCUGGCcuGCGGGGGC- -5'
3100 3' -61 NC_001493.1 + 92266 0.67 0.667772
Target:  5'- aCCgGUGccaagaucUCACGaGAggugaucaCGGAUGCCCCCGu -3'
miRNA:   3'- -GGgUAC--------AGUGC-CUg-------GCCUGCGGGGGC- -5'
3100 3' -61 NC_001493.1 + 50545 0.67 0.657044
Target:  5'- gCCCGUGUgGCuGGGucccgguaucaucCCGGAC-UCCCCGc -3'
miRNA:   3'- -GGGUACAgUG-CCU-------------GGCCUGcGGGGGC- -5'
3100 3' -61 NC_001493.1 + 110670 0.67 0.638466
Target:  5'- gCCGUGUCACGcAUCGGugGgucgagaUCCCGa -3'
miRNA:   3'- gGGUACAGUGCcUGGCCugCg------GGGGC- -5'
3100 3' -61 NC_001493.1 + 113276 0.67 0.628679
Target:  5'- gCCCA-GcCACGGACCcGGCaaCCCCCu -3'
miRNA:   3'- -GGGUaCaGUGCCUGGcCUGc-GGGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.