miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3100 5' -53 NC_001493.1 + 125171 0.66 0.9703
Target:  5'- cGGCGGgugacuccgGGGUCGucgUCCUGGugauGAUCGGc -3'
miRNA:   3'- -UUGCCa--------CCCAGCua-GGGACU----UUAGCU- -5'
3100 5' -53 NC_001493.1 + 9617 0.66 0.9703
Target:  5'- cGGCGGgugacuccgGGGUCGucgUCCUGGugauGAUCGGc -3'
miRNA:   3'- -UUGCCa--------CCCAGCua-GGGACU----UUAGCU- -5'
3100 5' -53 NC_001493.1 + 20739 0.66 0.967199
Target:  5'- cGACgGGUGGGUucCGAuguaaUCCCUGAGAc--- -3'
miRNA:   3'- -UUG-CCACCCA--GCU-----AGGGACUUUagcu -5'
3100 5' -53 NC_001493.1 + 51538 0.66 0.967199
Target:  5'- gGAgGGUGGG-CGcAUUgUUGAAGUCGGc -3'
miRNA:   3'- -UUgCCACCCaGC-UAGgGACUUUAGCU- -5'
3100 5' -53 NC_001493.1 + 109263 0.67 0.943731
Target:  5'- cGGCGGUcGGGaaaaCGAUaaccuuggcccCCCUGAAGUCGc -3'
miRNA:   3'- -UUGCCA-CCCa---GCUA-----------GGGACUUUAGCu -5'
3100 5' -53 NC_001493.1 + 91000 0.67 0.938477
Target:  5'- cACGGUGaggggcuGGUCGGUCCC----GUCGAu -3'
miRNA:   3'- uUGCCAC-------CCAGCUAGGGacuuUAGCU- -5'
3100 5' -53 NC_001493.1 + 110657 0.69 0.870036
Target:  5'- -uCGGUGGGUCGAgaUCCCgaaGAAugcaccgCGGa -3'
miRNA:   3'- uuGCCACCCAGCU--AGGGa--CUUua-----GCU- -5'
3100 5' -53 NC_001493.1 + 120786 0.69 0.870036
Target:  5'- gAAUGGcGGGUCG-UCUCUGAgucugagcggagGAUCGAg -3'
miRNA:   3'- -UUGCCaCCCAGCuAGGGACU------------UUAGCU- -5'
3100 5' -53 NC_001493.1 + 5232 0.69 0.870036
Target:  5'- gAAUGGcGGGUCG-UCUCUGAgucugagcggagGAUCGAg -3'
miRNA:   3'- -UUGCCaCCCAGCuAGGGACU------------UUAGCU- -5'
3100 5' -53 NC_001493.1 + 113148 0.7 0.854397
Target:  5'- --gGGUGGGUUGGUCUCggu-AUCGAc -3'
miRNA:   3'- uugCCACCCAGCUAGGGacuuUAGCU- -5'
3100 5' -53 NC_001493.1 + 63318 0.71 0.783946
Target:  5'- cACGGUGucGGUCGAUCCCgcgGGcuUCGu -3'
miRNA:   3'- uUGCCAC--CCAGCUAGGGa--CUuuAGCu -5'
3100 5' -53 NC_001493.1 + 91386 1.07 0.006421
Target:  5'- aAACGGUGGGUCGAUCCCUGAAAUCGAa -3'
miRNA:   3'- -UUGCCACCCAGCUAGGGACUUUAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.