miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31000 3' -51.2 NC_006560.1 + 45274 0.66 0.995096
Target:  5'- -gGGAGGUGCccCGggG-GUACgcgcgGAGGa -3'
miRNA:   3'- ggCCUCCACGa-GUaaCaCAUGa----CUCC- -5'
31000 3' -51.2 NC_006560.1 + 116443 0.66 0.990074
Target:  5'- cCCGGGGG-GCUCGcaGUGguaGaaGAGGa -3'
miRNA:   3'- -GGCCUCCaCGAGUaaCACa--UgaCUCC- -5'
31000 3' -51.2 NC_006560.1 + 39913 0.66 0.990074
Target:  5'- gCCGG-GGUGCgcucggGUGgcugggugGCUGGGGc -3'
miRNA:   3'- -GGCCuCCACGaguaa-CACa-------UGACUCC- -5'
31000 3' -51.2 NC_006560.1 + 49685 0.67 0.98719
Target:  5'- -aGGGGGUGgUgGgUGUGUAUaUGGGGg -3'
miRNA:   3'- ggCCUCCACgAgUaACACAUG-ACUCC- -5'
31000 3' -51.2 NC_006560.1 + 145468 0.68 0.97953
Target:  5'- cCCGGGGGggGCUCcgcccccUGUGUcccuGCgGGGGg -3'
miRNA:   3'- -GGCCUCCa-CGAGua-----ACACA----UGaCUCC- -5'
31000 3' -51.2 NC_006560.1 + 34287 0.68 0.974618
Target:  5'- aCGGGGGUGUgcgCGccugUGUGUcugcGCcGAGGg -3'
miRNA:   3'- gGCCUCCACGa--GUa---ACACA----UGaCUCC- -5'
31000 3' -51.2 NC_006560.1 + 27836 0.74 0.771952
Target:  5'- gCCGGGGGUGC-CGggG-GUGCcGGGGg -3'
miRNA:   3'- -GGCCUCCACGaGUaaCaCAUGaCUCC- -5'
31000 3' -51.2 NC_006560.1 + 138018 1.14 0.004577
Target:  5'- cCCGGAGGUGCUCAUUGUGUACUGAGGa -3'
miRNA:   3'- -GGCCUCCACGAGUAACACAUGACUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.