miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31001 3' -59.2 NC_006560.1 + 149487 0.66 0.761617
Target:  5'- cGGC-GGCCcgGGCCGacgcuccccgccCGGGcCGCCGGc -3'
miRNA:   3'- cUCGaCCGGuaCCGGU------------GCUU-GCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 107999 0.66 0.761617
Target:  5'- cGGCcgGGUCGUcGCCGCGcuGCGCCGc -3'
miRNA:   3'- cUCGa-CCGGUAcCGGUGCu-UGCGGCu -5'
31001 3' -59.2 NC_006560.1 + 95555 0.66 0.759738
Target:  5'- gGAGCUcGCgCGguucaucaugggGGCCGgGGGCGCCGGc -3'
miRNA:   3'- -CUCGAcCG-GUa-----------CCGGUgCUUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 119629 0.66 0.755967
Target:  5'- cGGC-GGCgG-GGCCGCGcgcaucgcggaggucGACGCCGAc -3'
miRNA:   3'- cUCGaCCGgUaCCGGUGC---------------UUGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 68307 0.66 0.752179
Target:  5'- -uGCUGGCgCAccgccUGGCCGucgcgcugcCGGACGCCc- -3'
miRNA:   3'- cuCGACCG-GU-----ACCGGU---------GCUUGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 24515 0.66 0.752179
Target:  5'- -cGCUGGCCAaccGCCucuGCGGGC-CCGAc -3'
miRNA:   3'- cuCGACCGGUac-CGG---UGCUUGcGGCU- -5'
31001 3' -59.2 NC_006560.1 + 42636 0.66 0.752179
Target:  5'- -cGC-GcGCCAgGGCgGCGAACGCCu- -3'
miRNA:   3'- cuCGaC-CGGUaCCGgUGCUUGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 86257 0.66 0.752179
Target:  5'- gGAGUagGGCCccGGCgCGCGcAugGCCGc -3'
miRNA:   3'- -CUCGa-CCGGuaCCG-GUGC-UugCGGCu -5'
31001 3' -59.2 NC_006560.1 + 95161 0.66 0.752179
Target:  5'- -cGCUGGCgA--GCCugGGGCGCUGc -3'
miRNA:   3'- cuCGACCGgUacCGGugCUUGCGGCu -5'
31001 3' -59.2 NC_006560.1 + 117024 0.66 0.752179
Target:  5'- gGAGCaGGCCGUGGCguuCGuguGCGUCa- -3'
miRNA:   3'- -CUCGaCCGGUACCGgu-GCu--UGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 122842 0.66 0.752179
Target:  5'- aAGCUGGCCGUcaagaccauccgGGaCCGgGAGugguacacCGCCGAg -3'
miRNA:   3'- cUCGACCGGUA------------CC-GGUgCUU--------GCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 129638 0.66 0.752179
Target:  5'- cGGCggGGCCGUGGgCgagGCGGagcacGCGCUGAu -3'
miRNA:   3'- cUCGa-CCGGUACCgG---UGCU-----UGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 130249 0.66 0.752179
Target:  5'- cGAGgUGGCgGUGGCguCGAGCgaGCUGc -3'
miRNA:   3'- -CUCgACCGgUACCGguGCUUG--CGGCu -5'
31001 3' -59.2 NC_006560.1 + 3585 0.66 0.752179
Target:  5'- cGGGCUgcgGGCCAgcagcGG-CGCGGcgGCGCCGGc -3'
miRNA:   3'- -CUCGA---CCGGUa----CCgGUGCU--UGCGGCU- -5'
31001 3' -59.2 NC_006560.1 + 118004 0.66 0.752179
Target:  5'- cGGCggcGGCCGaGGCCGCGGcgcaccugGCGgCGGg -3'
miRNA:   3'- cUCGa--CCGGUaCCGGUGCU--------UGCgGCU- -5'
31001 3' -59.2 NC_006560.1 + 23380 0.66 0.742637
Target:  5'- -cGCcGGCUAcgGcGCCGCGGGCGUCGu -3'
miRNA:   3'- cuCGaCCGGUa-C-CGGUGCUUGCGGCu -5'
31001 3' -59.2 NC_006560.1 + 111435 0.66 0.742637
Target:  5'- aGGCgGGCCAccGCCGCGAgGCGaUCGAg -3'
miRNA:   3'- cUCGaCCGGUacCGGUGCU-UGC-GGCU- -5'
31001 3' -59.2 NC_006560.1 + 125484 0.66 0.742637
Target:  5'- gGGGCUGaGCC-UGcGCCugGGggACGCCc- -3'
miRNA:   3'- -CUCGAC-CGGuAC-CGGugCU--UGCGGcu -5'
31001 3' -59.2 NC_006560.1 + 146469 0.66 0.742637
Target:  5'- gGAGCggggGGCgGagcggcGGCCGCGAGCggagguGCCGGg -3'
miRNA:   3'- -CUCGa---CCGgUa-----CCGGUGCUUG------CGGCU- -5'
31001 3' -59.2 NC_006560.1 + 70116 0.66 0.739756
Target:  5'- cAGCUGccccccgugcccccGCCggagGUGGCCACGAGCcugcuGCUGAu -3'
miRNA:   3'- cUCGAC--------------CGG----UACCGGUGCUUG-----CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.