Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31001 | 5' | -52.5 | NC_006560.1 | + | 137800 | 1.11 | 0.005211 |
Target: 5'- aGCUCGAUGCUCGCCAUGACGAUCACGc -3' miRNA: 3'- -CGAGCUACGAGCGGUACUGCUAGUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 106407 | 0.74 | 0.728111 |
Target: 5'- aGCUCGAggcgcgccucgggcgGCUgGCCGcggaGGCGGUCGCGg -3' miRNA: 3'- -CGAGCUa--------------CGAgCGGUa---CUGCUAGUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 4557 | 0.72 | 0.78351 |
Target: 5'- gGCUCGGccccgggccaggGCUCGCCGcUGGCGuagccGUCGCGg -3' miRNA: 3'- -CGAGCUa-----------CGAGCGGU-ACUGC-----UAGUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 52173 | 0.7 | 0.877611 |
Target: 5'- cGCUCGAgcgcGCgucCGCCAUGcaACGAcgCACGc -3' miRNA: 3'- -CGAGCUa---CGa--GCGGUAC--UGCUa-GUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 73040 | 0.7 | 0.884769 |
Target: 5'- gGC-CGAgUGCUCGCgGcUGACGGUCAaCGc -3' miRNA: 3'- -CGaGCU-ACGAGCGgU-ACUGCUAGU-GC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 109164 | 0.7 | 0.884769 |
Target: 5'- --gCGAU-CUCGCCGggccGGCGGUCGCGu -3' miRNA: 3'- cgaGCUAcGAGCGGUa---CUGCUAGUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 135112 | 0.7 | 0.898387 |
Target: 5'- cGCUCGG-GCUCgaGCCGgcgGGCGGcCACGu -3' miRNA: 3'- -CGAGCUaCGAG--CGGUa--CUGCUaGUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 55339 | 0.7 | 0.898387 |
Target: 5'- gGCUCGuggcggccgugGUGCUCcaGCaCGggGACGGUCGCGg -3' miRNA: 3'- -CGAGC-----------UACGAG--CG-GUa-CUGCUAGUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 75090 | 0.7 | 0.904839 |
Target: 5'- cCUCGAcGCcCGCag-GGCGAUCGCGc -3' miRNA: 3'- cGAGCUaCGaGCGguaCUGCUAGUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 121663 | 0.69 | 0.928205 |
Target: 5'- cGgUCuGGUGC-CGCCuggggGUGGCGGUCGCa -3' miRNA: 3'- -CgAG-CUACGaGCGG-----UACUGCUAGUGc -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 78356 | 0.69 | 0.928205 |
Target: 5'- cGCcCGAccccGCggCGCgCGUGACGGUCAUGg -3' miRNA: 3'- -CGaGCUa---CGa-GCG-GUACUGCUAGUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 89673 | 0.69 | 0.933431 |
Target: 5'- uCUCGAUGCUgucggcccggagCGCCGacgccgacgcGGCGGUCGCGc -3' miRNA: 3'- cGAGCUACGA------------GCGGUa---------CUGCUAGUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 142949 | 0.69 | 0.933431 |
Target: 5'- cCUCGA-GCUCGCgA-GGCGAcgCGCGg -3' miRNA: 3'- cGAGCUaCGAGCGgUaCUGCUa-GUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 58204 | 0.68 | 0.952293 |
Target: 5'- cGCUCGAgagcccgggcuccggGCUCGCCGgagcGACGGggGCc -3' miRNA: 3'- -CGAGCUa--------------CGAGCGGUa---CUGCUagUGc -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 86148 | 0.68 | 0.955893 |
Target: 5'- cGCgcgaGAUGUgcgcCGCCAUG-CGGUCGCc -3' miRNA: 3'- -CGag--CUACGa---GCGGUACuGCUAGUGc -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 42646 | 0.68 | 0.955893 |
Target: 5'- gGCggCGAacgccUGCccccggggCGCCAUGGCGAUC-CGg -3' miRNA: 3'- -CGa-GCU-----ACGa-------GCGGUACUGCUAGuGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 127477 | 0.68 | 0.959671 |
Target: 5'- cGCgcgCGAgacggGCUCGCCGcccGCGggCGCGg -3' miRNA: 3'- -CGa--GCUa----CGAGCGGUac-UGCuaGUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 126491 | 0.68 | 0.959671 |
Target: 5'- gGUgCGGUGCUCGCgGUGguagagguagGCGcgCACGc -3' miRNA: 3'- -CGaGCUACGAGCGgUAC----------UGCuaGUGC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 35766 | 0.67 | 0.963219 |
Target: 5'- aGCUCGGUGUuccuUCGCC-UGACGccCGgGa -3' miRNA: 3'- -CGAGCUACG----AGCGGuACUGCuaGUgC- -5' |
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31001 | 5' | -52.5 | NC_006560.1 | + | 78816 | 0.67 | 0.96935 |
Target: 5'- uCUCGccggGCUCGCCGcgaagGACGAcccuucuUCGCGc -3' miRNA: 3'- cGAGCua--CGAGCGGUa----CUGCU-------AGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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