miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31002 3' -53.4 NC_006560.1 + 138125 0.66 0.949193
Target:  5'- cGUCgGCCUGCGUGCU-----GCCGGAc -3'
miRNA:   3'- -CAG-UGGAUGCACGAguuguCGGUCUa -5'
31002 3' -53.4 NC_006560.1 + 17095 0.66 0.939942
Target:  5'- cGUgACCUGCGcgagGCUCAGgGGgCGGGa -3'
miRNA:   3'- -CAgUGGAUGCa---CGAGUUgUCgGUCUa -5'
31002 3' -53.4 NC_006560.1 + 3716 0.66 0.939942
Target:  5'- -gCACCagGCGcaGCUCGcGCAGCCAGGc -3'
miRNA:   3'- caGUGGa-UGCa-CGAGU-UGUCGGUCUa -5'
31002 3' -53.4 NC_006560.1 + 39093 0.67 0.924148
Target:  5'- cUCGCUgACGcGCUCGGCGGCCGc-- -3'
miRNA:   3'- cAGUGGaUGCaCGAGUUGUCGGUcua -5'
31002 3' -53.4 NC_006560.1 + 110755 0.67 0.912331
Target:  5'- -cCGCCUACGgGCacgCGGCcGCCAGGUc -3'
miRNA:   3'- caGUGGAUGCaCGa--GUUGuCGGUCUA- -5'
31002 3' -53.4 NC_006560.1 + 51670 0.69 0.855126
Target:  5'- -aCGCgUGCGUGCUCcgGGCGGCCGc-- -3'
miRNA:   3'- caGUGgAUGCACGAG--UUGUCGGUcua -5'
31002 3' -53.4 NC_006560.1 + 90415 0.69 0.846933
Target:  5'- aUCACCUucACGaUGCUCGACGGCgcccCGGGc -3'
miRNA:   3'- cAGUGGA--UGC-ACGAGUUGUCG----GUCUa -5'
31002 3' -53.4 NC_006560.1 + 11665 0.69 0.846933
Target:  5'- aGUCGCUUcCGgggGCUCGGCGGuCCGGGc -3'
miRNA:   3'- -CAGUGGAuGCa--CGAGUUGUC-GGUCUa -5'
31002 3' -53.4 NC_006560.1 + 11626 0.69 0.846933
Target:  5'- aGUCGCUUcCGgggGCUCGGCGGuCCGGGc -3'
miRNA:   3'- -CAGUGGAuGCa--CGAGUUGUC-GGUCUa -5'
31002 3' -53.4 NC_006560.1 + 87794 0.72 0.703842
Target:  5'- gGUCGCC-GCGcccccGCUCGACGGUCAGGUu -3'
miRNA:   3'- -CAGUGGaUGCa----CGAGUUGUCGGUCUA- -5'
31002 3' -53.4 NC_006560.1 + 111637 0.73 0.608693
Target:  5'- cGUCACCUACGgcgagauggUGCUCAGCGGCa---- -3'
miRNA:   3'- -CAGUGGAUGC---------ACGAGUUGUCGgucua -5'
31002 3' -53.4 NC_006560.1 + 136879 1.05 0.00669
Target:  5'- cGUCACCUACGUGCUCAACAGCCAGAUc -3'
miRNA:   3'- -CAGUGGAUGCACGAGUUGUCGGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.