miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31002 5' -55.4 NC_006560.1 + 136913 1.12 0.001827
Target:  5'- aCCACCCGACUGCGCAAGCUGGUGUUCg -3'
miRNA:   3'- -GGUGGGCUGACGCGUUCGACCACAAG- -5'
31002 5' -55.4 NC_006560.1 + 23652 0.82 0.197181
Target:  5'- gCGCCUGGCUGCGCGAGCugcgccUGGUGcgCg -3'
miRNA:   3'- gGUGGGCUGACGCGUUCG------ACCACaaG- -5'
31002 5' -55.4 NC_006560.1 + 19416 0.74 0.529043
Target:  5'- gUCGCCgCGGCgGCGCucggcuGAGCUGGUGUcCg -3'
miRNA:   3'- -GGUGG-GCUGaCGCG------UUCGACCACAaG- -5'
31002 5' -55.4 NC_006560.1 + 73348 0.73 0.549034
Target:  5'- gCCGCCUGGCgcugGC-CAAGCUGGUucUCg -3'
miRNA:   3'- -GGUGGGCUGa---CGcGUUCGACCAcaAG- -5'
31002 5' -55.4 NC_006560.1 + 111824 0.72 0.620469
Target:  5'- aCCuggugaCCGuCgGCGaCAAGCUGGUGUUCc -3'
miRNA:   3'- -GGug----GGCuGaCGC-GUUCGACCACAAG- -5'
31002 5' -55.4 NC_006560.1 + 50361 0.72 0.651363
Target:  5'- gCCAUCCGAuCUGUucGCGgccgAGCUGGcGUUCg -3'
miRNA:   3'- -GGUGGGCU-GACG--CGU----UCGACCaCAAG- -5'
31002 5' -55.4 NC_006560.1 + 24392 0.71 0.682116
Target:  5'- -aGCCCGAggacgUGCGCGuGCUGGUGcUCu -3'
miRNA:   3'- ggUGGGCUg----ACGCGUuCGACCACaAG- -5'
31002 5' -55.4 NC_006560.1 + 74644 0.69 0.778642
Target:  5'- cCUGCCCGACgccGCGCAGGCcgcgcccccggaGGUGcgCg -3'
miRNA:   3'- -GGUGGGCUGa--CGCGUUCGa-----------CCACaaG- -5'
31002 5' -55.4 NC_006560.1 + 71731 0.69 0.780508
Target:  5'- gUACCCGuCgggGCGCGGccugcGCUGcGUGUUCu -3'
miRNA:   3'- gGUGGGCuGa--CGCGUU-----CGAC-CACAAG- -5'
31002 5' -55.4 NC_006560.1 + 84483 0.69 0.780508
Target:  5'- gCGCCCG-CgaGCGCGAGCgguaccgcgGcGUGUUCg -3'
miRNA:   3'- gGUGGGCuGa-CGCGUUCGa--------C-CACAAG- -5'
31002 5' -55.4 NC_006560.1 + 80845 0.69 0.798868
Target:  5'- gCGCCUaggGGCUGCGCGcgGGCUGGg---- -3'
miRNA:   3'- gGUGGG---CUGACGCGU--UCGACCacaag -5'
31002 5' -55.4 NC_006560.1 + 90662 0.69 0.798868
Target:  5'- cCUACCUGGC-GCGCGccgccGGCcUGGUGggCg -3'
miRNA:   3'- -GGUGGGCUGaCGCGU-----UCG-ACCACaaG- -5'
31002 5' -55.4 NC_006560.1 + 99344 0.69 0.798868
Target:  5'- gCCGCCUcccACUGCGCcGGCUGGg---- -3'
miRNA:   3'- -GGUGGGc--UGACGCGuUCGACCacaag -5'
31002 5' -55.4 NC_006560.1 + 114667 0.69 0.798868
Target:  5'- cCCGCCCGGgUGcCGCGAGCUcgucgaGGacccgugcgggcUGUUCc -3'
miRNA:   3'- -GGUGGGCUgAC-GCGUUCGA------CC------------ACAAG- -5'
31002 5' -55.4 NC_006560.1 + 94597 0.69 0.807823
Target:  5'- aCGCCCgGGCUGUaugccgucaGCGAGCUGcG-GUUCu -3'
miRNA:   3'- gGUGGG-CUGACG---------CGUUCGAC-CaCAAG- -5'
31002 5' -55.4 NC_006560.1 + 117832 0.68 0.816617
Target:  5'- gCCGCCCuGC-GCGUGAGCUGG-GggCc -3'
miRNA:   3'- -GGUGGGcUGaCGCGUUCGACCaCaaG- -5'
31002 5' -55.4 NC_006560.1 + 115827 0.68 0.816617
Target:  5'- gUCGCCUGGCUcGCGCAcgccgcgcAGCUGGg---- -3'
miRNA:   3'- -GGUGGGCUGA-CGCGU--------UCGACCacaag -5'
31002 5' -55.4 NC_006560.1 + 122197 0.68 0.824386
Target:  5'- aCCugCUGAUUGCGCAccGGC-GGUaccuagaccccgcGUUCg -3'
miRNA:   3'- -GGugGGCUGACGCGU--UCGaCCA-------------CAAG- -5'
31002 5' -55.4 NC_006560.1 + 112703 0.68 0.824386
Target:  5'- aCACCCG-CUGCGCcgcguucgucaacGAcuacucGCUGGUGUccuUCa -3'
miRNA:   3'- gGUGGGCuGACGCG-------------UU------CGACCACA---AG- -5'
31002 5' -55.4 NC_006560.1 + 103387 0.68 0.825241
Target:  5'- gUCGCCCGuuGCUcGCGCuuGCUGGcgGUUUc -3'
miRNA:   3'- -GGUGGGC--UGA-CGCGuuCGACCa-CAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.