Results 41 - 60 of 360 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31003 | 5' | -56.6 | NC_006560.1 | + | 33808 | 0.66 | 0.871866 |
Target: 5'- --cGGGCGcGGACGGGgGGCGGgGg-- -3' miRNA: 3'- uauUUCGC-UUUGCCCgCCGCCgCgcu -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 95164 | 0.66 | 0.871866 |
Target: 5'- ---uGGCGAGccugGGGCGcuGCGuGCGCGAg -3' miRNA: 3'- uauuUCGCUUug--CCCGC--CGC-CGCGCU- -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 126799 | 0.66 | 0.871866 |
Target: 5'- -gGGGGCGGAcaGCGGGaaguugagGGCGGCGa-- -3' miRNA: 3'- uaUUUCGCUU--UGCCCg-------CCGCCGCgcu -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 131875 | 0.66 | 0.871866 |
Target: 5'- ----uGCGggGCGcGGUcGCGGCGUa- -3' miRNA: 3'- uauuuCGCuuUGC-CCGcCGCCGCGcu -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 102407 | 0.66 | 0.871866 |
Target: 5'- ---cGGCGGccuCGGGC-GCGGcCGCGGc -3' miRNA: 3'- uauuUCGCUuu-GCCCGcCGCC-GCGCU- -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 26289 | 0.66 | 0.874787 |
Target: 5'- -gGGAGCcuGGCGGGCggcuucugccccgucGGCGGcCGCGu -3' miRNA: 3'- uaUUUCGcuUUGCCCG---------------CCGCC-GCGCu -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 112139 | 0.66 | 0.878389 |
Target: 5'- ---cGGCGGugGGCGGGCucaaccaggagccGGUGGaCGCGGc -3' miRNA: 3'- uauuUCGCU--UUGCCCG-------------CCGCC-GCGCU- -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 58232 | 0.66 | 0.878389 |
Target: 5'- -cGGAGCGAcGgGGGcCGGgGGCcgccgagGCGAg -3' miRNA: 3'- uaUUUCGCUuUgCCC-GCCgCCG-------CGCU- -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 130214 | 0.67 | 0.832557 |
Target: 5'- ----cGCGAcgcgcGCGGggacGCGGUGGCGCGc -3' miRNA: 3'- uauuuCGCUu----UGCC----CGCCGCCGCGCu -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 114345 | 0.67 | 0.832557 |
Target: 5'- -gGGGGCGc-GCGGcCGGgGGCGCGu -3' miRNA: 3'- uaUUUCGCuuUGCCcGCCgCCGCGCu -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 99365 | 0.67 | 0.832557 |
Target: 5'- --uGGGCGuacugGGGCGGgGGCGCc- -3' miRNA: 3'- uauUUCGCuuug-CCCGCCgCCGCGcu -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 51729 | 0.67 | 0.832557 |
Target: 5'- --uGGGcCGAcgcGCGGGCGGCcucgcGGCGCa- -3' miRNA: 3'- uauUUC-GCUu--UGCCCGCCG-----CCGCGcu -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 33187 | 0.67 | 0.832557 |
Target: 5'- -gGAAGgGGcccGCGGGgaaGGCGGcCGCGGg -3' miRNA: 3'- uaUUUCgCUu--UGCCCg--CCGCC-GCGCU- -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 41279 | 0.67 | 0.840814 |
Target: 5'- -cAGGGCcaGGAAcgucCGGGCGGUcGCGCGGc -3' miRNA: 3'- uaUUUCG--CUUU----GCCCGCCGcCGCGCU- -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 146978 | 0.67 | 0.840814 |
Target: 5'- --uGGGCGGgugGGCGGGgcaUGGCGGCucGCGGc -3' miRNA: 3'- uauUUCGCU---UUGCCC---GCCGCCG--CGCU- -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 33457 | 0.67 | 0.840814 |
Target: 5'- --cGGGCGGGccCGGGCaggaggagaGGCGGCGgGGg -3' miRNA: 3'- uauUUCGCUUu-GCCCG---------CCGCCGCgCU- -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 84700 | 0.67 | 0.840814 |
Target: 5'- ----cGCGGgcGACGGGCGccuCGGCGCc- -3' miRNA: 3'- uauuuCGCU--UUGCCCGCc--GCCGCGcu -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 2218 | 0.67 | 0.840814 |
Target: 5'- ---cAGCGccagguAGACGGGCcgcaGCGGCGCa- -3' miRNA: 3'- uauuUCGC------UUUGCCCGc---CGCCGCGcu -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 56859 | 0.67 | 0.840814 |
Target: 5'- -aGAGGCcccGGAC-GGCGGCGGuCGCGu -3' miRNA: 3'- uaUUUCGc--UUUGcCCGCCGCC-GCGCu -5' |
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31003 | 5' | -56.6 | NC_006560.1 | + | 33056 | 0.67 | 0.832557 |
Target: 5'- -gAAGGCGggGaaGGCGGCcgaggggaaGGCGgGGa -3' miRNA: 3'- uaUUUCGCuuUgcCCGCCG---------CCGCgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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