miRNA display CGI


Results 41 - 60 of 360 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31003 5' -56.6 NC_006560.1 + 131382 0.66 0.886119
Target:  5'- -gGGGGCGcggugcuGGCGGGCGcUGGcCGCGGa -3'
miRNA:   3'- uaUUUCGCu------UUGCCCGCcGCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 134521 0.66 0.886119
Target:  5'- -gGAGGCGGcguuGCGGacGCGGCaGaCGCGGg -3'
miRNA:   3'- uaUUUCGCUu---UGCC--CGCCGcC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 135381 0.66 0.886119
Target:  5'- ----cGCGggG-GGGCGGaGGcCGCGGg -3'
miRNA:   3'- uauuuCGCuuUgCCCGCCgCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 43421 0.66 0.886119
Target:  5'- ---cGGCGccGgGGGCGuCGGCGCGc -3'
miRNA:   3'- uauuUCGCuuUgCCCGCcGCCGCGCu -5'
31003 5' -56.6 NC_006560.1 + 144125 0.66 0.886119
Target:  5'- ---uGGCuccGGCGGccGCGGCGGCGCc- -3'
miRNA:   3'- uauuUCGcu-UUGCC--CGCCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 112139 0.66 0.878389
Target:  5'- ---cGGCGGugGGCGGGCucaaccaggagccGGUGGaCGCGGc -3'
miRNA:   3'- uauuUCGCU--UUGCCCG-------------CCGCC-GCGCU- -5'
31003 5' -56.6 NC_006560.1 + 26289 0.66 0.874787
Target:  5'- -gGGAGCcuGGCGGGCggcuucugccccgucGGCGGcCGCGu -3'
miRNA:   3'- uaUUUCGcuUUGCCCG---------------CCGCC-GCGCu -5'
31003 5' -56.6 NC_006560.1 + 3960 0.66 0.864412
Target:  5'- -gAGGGCGGccgcCaGGCGGCGcuGCGCGGc -3'
miRNA:   3'- uaUUUCGCUuu--GcCCGCCGC--CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 34597 0.66 0.864412
Target:  5'- -cGGGGgGggGCuccgggGGGUGGCcGCGCGGc -3'
miRNA:   3'- uaUUUCgCuuUG------CCCGCCGcCGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 35543 0.66 0.864412
Target:  5'- ----cGCGggGCGGGggggcCGGCaauuaGCGCGGa -3'
miRNA:   3'- uauuuCGCuuUGCCC-----GCCGc----CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 28177 0.66 0.864412
Target:  5'- cUGGGGUGAGucggugguccCGGGcCGGCGGCccggGCGGg -3'
miRNA:   3'- uAUUUCGCUUu---------GCCC-GCCGCCG----CGCU- -5'
31003 5' -56.6 NC_006560.1 + 32401 0.66 0.864412
Target:  5'- -gGGGGCGGA--GGGUGGgGGC-CGAg -3'
miRNA:   3'- uaUUUCGCUUugCCCGCCgCCGcGCU- -5'
31003 5' -56.6 NC_006560.1 + 97369 0.66 0.864412
Target:  5'- ----cGCGAgcaGACGcGGCGGCcGGCcggggGCGAc -3'
miRNA:   3'- uauuuCGCU---UUGC-CCGCCG-CCG-----CGCU- -5'
31003 5' -56.6 NC_006560.1 + 100484 0.66 0.864412
Target:  5'- ----cGCGGGACagcgggGGGCcGCGGCGCu- -3'
miRNA:   3'- uauuuCGCUUUG------CCCGcCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 103040 0.66 0.864412
Target:  5'- ----cGCGGGgcGCGGGCGGCcGCuCGGg -3'
miRNA:   3'- uauuuCGCUU--UGCCCGCCGcCGcGCU- -5'
31003 5' -56.6 NC_006560.1 + 33808 0.66 0.871866
Target:  5'- --cGGGCGcGGACGGGgGGCGGgGg-- -3'
miRNA:   3'- uauUUCGC-UUUGCCCgCCGCCgCgcu -5'
31003 5' -56.6 NC_006560.1 + 95164 0.66 0.871866
Target:  5'- ---uGGCGAGccugGGGCGcuGCGuGCGCGAg -3'
miRNA:   3'- uauuUCGCUUug--CCCGC--CGC-CGCGCU- -5'
31003 5' -56.6 NC_006560.1 + 126799 0.66 0.871866
Target:  5'- -gGGGGCGGAcaGCGGGaaguugagGGCGGCGa-- -3'
miRNA:   3'- uaUUUCGCUU--UGCCCg-------CCGCCGCgcu -5'
31003 5' -56.6 NC_006560.1 + 131875 0.66 0.871866
Target:  5'- ----uGCGggGCGcGGUcGCGGCGUa- -3'
miRNA:   3'- uauuuCGCuuUGC-CCGcCGCCGCGcu -5'
31003 5' -56.6 NC_006560.1 + 102407 0.66 0.871866
Target:  5'- ---cGGCGGccuCGGGC-GCGGcCGCGGc -3'
miRNA:   3'- uauuUCGCUuu-GCCCGcCGCC-GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.