miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31004 3' -55 NC_006560.1 + 12951 0.66 0.929074
Target:  5'- cGGCcACGACGcGCUGGUuCUccGGAUGAa -3'
miRNA:   3'- -UUGaUGCUGCaCGACCAcGA--CCUGCU- -5'
31004 3' -55 NC_006560.1 + 115106 0.66 0.917971
Target:  5'- cGACgaucCGGCGgcaGCUGGcGCUGGcCGAc -3'
miRNA:   3'- -UUGau--GCUGCa--CGACCaCGACCuGCU- -5'
31004 3' -55 NC_006560.1 + 138593 0.66 0.917971
Target:  5'- aGACggggGCGGCG-GC-GGaccUGCUGGugGAg -3'
miRNA:   3'- -UUGa---UGCUGCaCGaCC---ACGACCugCU- -5'
31004 3' -55 NC_006560.1 + 76671 0.66 0.917971
Target:  5'- ---gACGAgGUGUgGGUGCgcuucGGGCGAg -3'
miRNA:   3'- uugaUGCUgCACGaCCACGa----CCUGCU- -5'
31004 3' -55 NC_006560.1 + 71625 0.66 0.917971
Target:  5'- aGGCcguCGACGgcUGcCUGGUGgaGGGCGGg -3'
miRNA:   3'- -UUGau-GCUGC--AC-GACCACgaCCUGCU- -5'
31004 3' -55 NC_006560.1 + 25930 0.66 0.91205
Target:  5'- cGCggaGGCGUGC-GGUGCcggagggGGGCGAg -3'
miRNA:   3'- uUGaugCUGCACGaCCACGa------CCUGCU- -5'
31004 3' -55 NC_006560.1 + 68374 0.66 0.905885
Target:  5'- -cCUGCG-CGacGC-GGUGCUGGACGc -3'
miRNA:   3'- uuGAUGCuGCa-CGaCCACGACCUGCu -5'
31004 3' -55 NC_006560.1 + 99353 0.66 0.905885
Target:  5'- cACUGCGcCG-GCUGG-GCguacugGGGCGGg -3'
miRNA:   3'- uUGAUGCuGCaCGACCaCGa-----CCUGCU- -5'
31004 3' -55 NC_006560.1 + 77660 0.67 0.899478
Target:  5'- cGCUGgGACGaGCUGG-GgUGGGCGc -3'
miRNA:   3'- uUGAUgCUGCaCGACCaCgACCUGCu -5'
31004 3' -55 NC_006560.1 + 8535 0.67 0.878835
Target:  5'- cGCUGCG-CGUGgUGGggGUgGGGCGAc -3'
miRNA:   3'- uUGAUGCuGCACgACCa-CGaCCUGCU- -5'
31004 3' -55 NC_006560.1 + 150227 0.68 0.863164
Target:  5'- cGCUGCcgGGCGUGCUGGUugcccgcGCUcucGGGCGc -3'
miRNA:   3'- uUGAUG--CUGCACGACCA-------CGA---CCUGCu -5'
31004 3' -55 NC_006560.1 + 24399 0.68 0.839977
Target:  5'- gGACgUGCG-CGUGCUGGUGCUcuACGc -3'
miRNA:   3'- -UUG-AUGCuGCACGACCACGAccUGCu -5'
31004 3' -55 NC_006560.1 + 146843 0.69 0.814271
Target:  5'- uGCUGCGGCG-GCgcgGG-GCgGGGCGGc -3'
miRNA:   3'- uUGAUGCUGCaCGa--CCaCGaCCUGCU- -5'
31004 3' -55 NC_006560.1 + 74089 0.69 0.796266
Target:  5'- cGACcugGCGGCcugGCUGGcgucGCUGGGCGAc -3'
miRNA:   3'- -UUGa--UGCUGca-CGACCa---CGACCUGCU- -5'
31004 3' -55 NC_006560.1 + 117457 0.7 0.738879
Target:  5'- cAGCUACGACGUGC-GGcGCgagcccGGGCGu -3'
miRNA:   3'- -UUGAUGCUGCACGaCCaCGa-----CCUGCu -5'
31004 3' -55 NC_006560.1 + 91205 0.7 0.738879
Target:  5'- cGACUGCGACGUGCUGG-GCa------ -3'
miRNA:   3'- -UUGAUGCUGCACGACCaCGaccugcu -5'
31004 3' -55 NC_006560.1 + 80853 0.71 0.708759
Target:  5'- gGGCUGCGcGCGgGCUGGgcgGCggGGGCGGc -3'
miRNA:   3'- -UUGAUGC-UGCaCGACCa--CGa-CCUGCU- -5'
31004 3' -55 NC_006560.1 + 136248 0.73 0.553949
Target:  5'- gGGCUGCGAccCGUGCUGGUcuGCgUGGGCu- -3'
miRNA:   3'- -UUGAUGCU--GCACGACCA--CG-ACCUGcu -5'
31004 3' -55 NC_006560.1 + 94957 0.75 0.484387
Target:  5'- cGCUGCGccGCGUGCUGGcGCgcaucggGGGCGGg -3'
miRNA:   3'- uUGAUGC--UGCACGACCaCGa------CCUGCU- -5'
31004 3' -55 NC_006560.1 + 127980 1.07 0.00444
Target:  5'- cAACUACGACGUGCUGGUGCUGGACGAg -3'
miRNA:   3'- -UUGAUGCUGCACGACCACGACCUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.