miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 149150 0.67 0.756961
Target:  5'- gGCGCGGGgcGGcCCCcaggggCGGCGCgCg -3'
miRNA:   3'- -CGCGUCCauCCaGGGcga---GUCGUGgG- -5'
31005 3' -59.1 NC_006560.1 + 14618 0.67 0.756961
Target:  5'- gGCGCGGcccucGGG-CCCGCgggCGGCACggCCg -3'
miRNA:   3'- -CGCGUCca---UCCaGGGCGa--GUCGUG--GG- -5'
31005 3' -59.1 NC_006560.1 + 61066 0.67 0.756961
Target:  5'- aGCGCAGGggcccgUGGG-CgCUGCUgaAGCGCCUc -3'
miRNA:   3'- -CGCGUCC------AUCCaG-GGCGAg-UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 37694 0.67 0.756961
Target:  5'- gGCGCcGGgccgcucuugauGGUCCCcgcGCUgaacggacggccgcaCAGCACCCg -3'
miRNA:   3'- -CGCGuCCau----------CCAGGG---CGA---------------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 93945 0.67 0.747562
Target:  5'- cGCGCAGcGcgAGGgcgagcgCCUGCUgGGCugUCu -3'
miRNA:   3'- -CGCGUC-Ca-UCCa------GGGCGAgUCGugGG- -5'
31005 3' -59.1 NC_006560.1 + 1292 0.67 0.747562
Target:  5'- cGCGCcGGgccgcccGGGUUCCGCccgcaCGGCuCCCg -3'
miRNA:   3'- -CGCGuCCa------UCCAGGGCGa----GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 218 0.67 0.747562
Target:  5'- cCGCGGG-AGGgcccggCCCGCggcUCGGUgcggGCCCc -3'
miRNA:   3'- cGCGUCCaUCCa-----GGGCG---AGUCG----UGGG- -5'
31005 3' -59.1 NC_006560.1 + 32719 0.67 0.738068
Target:  5'- cGCGCGGGcccgGGGUCCguCGggggggCGGgGCCCg -3'
miRNA:   3'- -CGCGUCCa---UCCAGG--GCga----GUCgUGGG- -5'
31005 3' -59.1 NC_006560.1 + 35541 0.67 0.738068
Target:  5'- cGCGCGGGgcgGGGgggCCgGCaaUUAGCGCg- -3'
miRNA:   3'- -CGCGUCCa--UCCa--GGgCG--AGUCGUGgg -5'
31005 3' -59.1 NC_006560.1 + 146777 0.67 0.738068
Target:  5'- cGCGCcugagucgGGGUcuGGGUCUgGgUCuGCGCCUg -3'
miRNA:   3'- -CGCG--------UCCA--UCCAGGgCgAGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 125 0.67 0.739021
Target:  5'- gGCGCGGGUuuGGGcggggccggccccgcCCCGCgguccCGGC-CCCg -3'
miRNA:   3'- -CGCGUCCA--UCCa--------------GGGCGa----GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 150454 0.67 0.739021
Target:  5'- gGCGCGGGUuuGGGcggggccggccccgcCCCGCgguccCGGC-CCCg -3'
miRNA:   3'- -CGCGUCCA--UCCa--------------GGGCGa----GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 142463 0.67 0.740926
Target:  5'- cCGCAGGUgcggcggcggccgccGGcGUUuuGCuuucgguUCGGCGCCCg -3'
miRNA:   3'- cGCGUCCA---------------UC-CAGggCG-------AGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 84049 0.67 0.744724
Target:  5'- uGCGCcaucgcggagaucgAGGUcgaccccuGGGcCCUGUUCGGgCACCCc -3'
miRNA:   3'- -CGCG--------------UCCA--------UCCaGGGCGAGUC-GUGGG- -5'
31005 3' -59.1 NC_006560.1 + 139717 0.68 0.689443
Target:  5'- aCGCGGGgucgGGGcggaUCgCGCUCugggcgugGGCGCCCc -3'
miRNA:   3'- cGCGUCCa---UCC----AGgGCGAG--------UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 142727 0.68 0.699293
Target:  5'- gGCGCccGGG-GGGcCCgGCggagccCGGCGCCCg -3'
miRNA:   3'- -CGCG--UCCaUCCaGGgCGa-----GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 24597 0.68 0.699293
Target:  5'- cGCGCAGGgcGuGcUCCUGCUCuccacgcGCgACCUg -3'
miRNA:   3'- -CGCGUCCauC-C-AGGGCGAGu------CG-UGGG- -5'
31005 3' -59.1 NC_006560.1 + 81194 0.68 0.699293
Target:  5'- gGCGCGGGUGGGgg-CGCgaCGGCgACCg -3'
miRNA:   3'- -CGCGUCCAUCCaggGCGa-GUCG-UGGg -5'
31005 3' -59.1 NC_006560.1 + 111983 0.68 0.699293
Target:  5'- aCGCGGGggaccuGGUcCCCGCgccgggcCAGCcggACCCg -3'
miRNA:   3'- cGCGUCCau----CCA-GGGCGa------GUCG---UGGG- -5'
31005 3' -59.1 NC_006560.1 + 39324 0.68 0.689443
Target:  5'- gGCGguGGggcGGGgccgCCCGCccUCGcgccuGCGCCCc -3'
miRNA:   3'- -CGCguCCa--UCCa---GGGCG--AGU-----CGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.