miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 114875 0.7 0.529914
Target:  5'- cGCGCGGG--GGUCgCCGCUCccGCauaaaagGCCCg -3'
miRNA:   3'- -CGCGUCCauCCAG-GGCGAGu-CG-------UGGG- -5'
31005 3' -59.1 NC_006560.1 + 123480 0.7 0.530879
Target:  5'- cGCGCuGGggcAGGUCCUGCuggaggucguggUCAGCGCg- -3'
miRNA:   3'- -CGCGuCCa--UCCAGGGCG------------AGUCGUGgg -5'
31005 3' -59.1 NC_006560.1 + 73179 0.7 0.530879
Target:  5'- gGCGCGGGggcggAGGgCCCGgcCUCGGC-CCUc -3'
miRNA:   3'- -CGCGUCCa----UCCaGGGC--GAGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 77682 0.7 0.540564
Target:  5'- cGCGCGGaG-AGGgcgcgcucgcCCCGCUCgcggagccggcgGGCGCCCg -3'
miRNA:   3'- -CGCGUC-CaUCCa---------GGGCGAG------------UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 57049 0.7 0.560104
Target:  5'- -aGCGGGguggugAGGUCCCaCggaacCAGCGCCUg -3'
miRNA:   3'- cgCGUCCa-----UCCAGGGcGa----GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 44822 0.7 0.560104
Target:  5'- cGCGC-GGcAGGU-CUGCgCGGCACCCc -3'
miRNA:   3'- -CGCGuCCaUCCAgGGCGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 64844 0.7 0.579836
Target:  5'- -aGCAGGcugGGGUCgCGCgcgcCGGCgcGCCCa -3'
miRNA:   3'- cgCGUCCa--UCCAGgGCGa---GUCG--UGGG- -5'
31005 3' -59.1 NC_006560.1 + 103038 0.7 0.579836
Target:  5'- cGCGCGGGgcgcGGGcggCCGCUCGGgGgCCg -3'
miRNA:   3'- -CGCGUCCa---UCCag-GGCGAGUCgUgGG- -5'
31005 3' -59.1 NC_006560.1 + 118571 0.7 0.540564
Target:  5'- gGCGCucGGUcucgcuGGUCCCGC--GGCACCa -3'
miRNA:   3'- -CGCGu-CCAu-----CCAGGGCGagUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 112829 0.7 0.550307
Target:  5'- cGCGCAgcuGGUGGGcgacuucacgcUCCCggggcccgaGCUCGGCGgCCa -3'
miRNA:   3'- -CGCGU---CCAUCC-----------AGGG---------CGAGUCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 99981 0.69 0.619675
Target:  5'- cGCGuCGGGgccUGGGUCCguCGCgcccgggaAGCGCCCu -3'
miRNA:   3'- -CGC-GUCC---AUCCAGG--GCGag------UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 4407 0.69 0.629675
Target:  5'- cGCGCGGcGUcg--CCCaGCUCGgGCGCCCa -3'
miRNA:   3'- -CGCGUC-CAuccaGGG-CGAGU-CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 123053 0.69 0.638676
Target:  5'- cGCGCGgcgagcacccccuGGUGa-UCCCGgccCUCGGCGCCCg -3'
miRNA:   3'- -CGCGU-------------CCAUccAGGGC---GAGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 34782 0.69 0.638676
Target:  5'- cCGCAGGUgucgggggcugcgGGGUUCCGCggcgCGGCcgggGCCa -3'
miRNA:   3'- cGCGUCCA-------------UCCAGGGCGa---GUCG----UGGg -5'
31005 3' -59.1 NC_006560.1 + 4175 0.69 0.589758
Target:  5'- gGCGUGGGccAGGcCCCaGCcgaAGCGCCCg -3'
miRNA:   3'- -CGCGUCCa-UCCaGGG-CGag-UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 139286 0.69 0.639676
Target:  5'- gGCGCGGGggggcaccGGGUgcCCCGUg-GGCGCCUc -3'
miRNA:   3'- -CGCGUCCa-------UCCA--GGGCGagUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 137188 0.69 0.629675
Target:  5'- cGCGgAGGgcgcGGcCCCGC-CGGCGgCCg -3'
miRNA:   3'- -CGCgUCCau--CCaGGGCGaGUCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 144271 0.69 0.633675
Target:  5'- uGCGCGGGgaccccccuccUCCCGC-CGGCGCUCc -3'
miRNA:   3'- -CGCGUCCaucc-------AGGGCGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 27156 0.69 0.589758
Target:  5'- cCGCGGGccGGGcccUCCCGCggCGGCGCgCg -3'
miRNA:   3'- cGCGUCCa-UCC---AGGGCGa-GUCGUGgG- -5'
31005 3' -59.1 NC_006560.1 + 127505 0.69 0.59971
Target:  5'- gGCGCGGcGgAGGcCCUGCUCGacuGCcuGCCCa -3'
miRNA:   3'- -CGCGUC-CaUCCaGGGCGAGU---CG--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.