miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 65324 0.68 0.649672
Target:  5'- gGCGaaucaGGGUGGGggCCgGCUCgccGGC-CCCa -3'
miRNA:   3'- -CGCg----UCCAUCCa-GGgCGAG---UCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 149360 0.68 0.649672
Target:  5'- cCGCGGGgAGGagCCGggCGGCGCCg -3'
miRNA:   3'- cGCGUCCaUCCagGGCgaGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 10661 0.68 0.649672
Target:  5'- cGCGCGGG--GGU-CCGCccgGGCGCCCc -3'
miRNA:   3'- -CGCGUCCauCCAgGGCGag-UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 52750 0.68 0.649672
Target:  5'- cGCGguGGUGGG-CCUGCgCGaCGCCa -3'
miRNA:   3'- -CGCguCCAUCCaGGGCGaGUcGUGGg -5'
31005 3' -59.1 NC_006560.1 + 126683 0.68 0.649672
Target:  5'- gGCGCcgacGUGGGgCCCcagCAGCACCCg -3'
miRNA:   3'- -CGCGuc--CAUCCaGGGcgaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 119933 0.68 0.649672
Target:  5'- uGCGCAGcGUGaaccacccccuGGcCCCcgcGCUCcGCGCCCu -3'
miRNA:   3'- -CGCGUC-CAU-----------CCaGGG---CGAGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 143023 0.68 0.659654
Target:  5'- gGCGggaCAGGUAGGUuccucCCCGCgaccCGCCCg -3'
miRNA:   3'- -CGC---GUCCAUCCA-----GGGCGagucGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 8305 0.68 0.659654
Target:  5'- -gGUGGGUGuGGUCCCuuUCGcGCACCUc -3'
miRNA:   3'- cgCGUCCAU-CCAGGGcgAGU-CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 52702 0.68 0.659654
Target:  5'- gGCGCGGGc----CCCGUUCaagagcAGCGCCCa -3'
miRNA:   3'- -CGCGUCCauccaGGGCGAG------UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 51446 0.68 0.659654
Target:  5'- cGCGCuGGcgacGGUCgCGCUCcGCcacGCCCg -3'
miRNA:   3'- -CGCGuCCau--CCAGgGCGAGuCG---UGGG- -5'
31005 3' -59.1 NC_006560.1 + 55771 0.68 0.659654
Target:  5'- aCGCGGGUGcGcaCCCGCUCcggAGCGgCCa -3'
miRNA:   3'- cGCGUCCAU-CcaGGGCGAG---UCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 27421 0.68 0.660652
Target:  5'- cGCGCGGGccuccGGcGUUUCGCguccgcguccucccgCGGCGCCCg -3'
miRNA:   3'- -CGCGUCCa----UC-CAGGGCGa--------------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 120440 0.68 0.668621
Target:  5'- cGCGCcccgucgAGGccguGGUgCUGCUCGGCuccACCCg -3'
miRNA:   3'- -CGCG-------UCCau--CCAgGGCGAGUCG---UGGG- -5'
31005 3' -59.1 NC_006560.1 + 92317 0.68 0.669616
Target:  5'- gGCGauucuGGUcGGGUCCCGC-CGGC-CCa -3'
miRNA:   3'- -CGCgu---CCA-UCCAGGGCGaGUCGuGGg -5'
31005 3' -59.1 NC_006560.1 + 71049 0.68 0.669616
Target:  5'- uGCuGCAGGUgacggacggGGuGUUCCGCgccUCGGCGCuCCg -3'
miRNA:   3'- -CG-CGUCCA---------UC-CAGGGCG---AGUCGUG-GG- -5'
31005 3' -59.1 NC_006560.1 + 21037 0.68 0.669616
Target:  5'- gGC-CGGGgcGGggcgCCCGCgCGGCGuCCCc -3'
miRNA:   3'- -CGcGUCCauCCa---GGGCGaGUCGU-GGG- -5'
31005 3' -59.1 NC_006560.1 + 39644 0.68 0.669616
Target:  5'- gGCGC-GGcGGaGUCuCCGCUCGggccgcggccGCGCCCc -3'
miRNA:   3'- -CGCGuCCaUC-CAG-GGCGAGU----------CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 115847 0.68 0.669616
Target:  5'- cGCGCAGcUGGGggaCgCGCUggcccUGGCGCCCg -3'
miRNA:   3'- -CGCGUCcAUCCa--GgGCGA-----GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 146300 0.68 0.676572
Target:  5'- gGCGCGgucggcguccacguGGUGGGUCuuCCGCgcacacuuccUCGGCcCCCg -3'
miRNA:   3'- -CGCGU--------------CCAUCCAG--GGCG----------AGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 21256 0.68 0.679548
Target:  5'- cGCGCAGGcgcggugAGGgcggCgGCggcgCGGCGCCCu -3'
miRNA:   3'- -CGCGUCCa------UCCag--GgCGa---GUCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.