Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31005 | 3' | -59.1 | NC_006560.1 | + | 134208 | 0.68 | 0.679548 |
Target: 5'- gGCGCGGGcccgcgGGGUcggccccgCCCGCcgcgCGGCccGCCCc -3' miRNA: 3'- -CGCGUCCa-----UCCA--------GGGCGa---GUCG--UGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 80161 | 0.68 | 0.679548 |
Target: 5'- gGgGCGGGUcgAGGUCCCccggcggguCUCGucccccGCACCCu -3' miRNA: 3'- -CgCGUCCA--UCCAGGGc--------GAGU------CGUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 21256 | 0.68 | 0.679548 |
Target: 5'- cGCGCAGGcgcggugAGGgcggCgGCggcgCGGCGCCCu -3' miRNA: 3'- -CGCGUCCa------UCCag--GgCGa---GUCGUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 19985 | 0.68 | 0.688456 |
Target: 5'- cCGCAGGUacggcAGGUCCgGgCUCcacucguccggguGGUGCCCc -3' miRNA: 3'- cGCGUCCA-----UCCAGGgC-GAG-------------UCGUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 139717 | 0.68 | 0.689443 |
Target: 5'- aCGCGGGgucgGGGcggaUCgCGCUCugggcgugGGCGCCCc -3' miRNA: 3'- cGCGUCCa---UCC----AGgGCGAG--------UCGUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 39324 | 0.68 | 0.689443 |
Target: 5'- gGCGguGGggcGGGgccgCCCGCccUCGcgccuGCGCCCc -3' miRNA: 3'- -CGCguCCa--UCCa---GGGCG--AGU-----CGUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 81194 | 0.68 | 0.699293 |
Target: 5'- gGCGCGGGUGGGgg-CGCgaCGGCgACCg -3' miRNA: 3'- -CGCGUCCAUCCaggGCGa-GUCG-UGGg -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 24597 | 0.68 | 0.699293 |
Target: 5'- cGCGCAGGgcGuGcUCCUGCUCuccacgcGCgACCUg -3' miRNA: 3'- -CGCGUCCauC-C-AGGGCGAGu------CG-UGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 111983 | 0.68 | 0.699293 |
Target: 5'- aCGCGGGggaccuGGUcCCCGCgccgggcCAGCcggACCCg -3' miRNA: 3'- cGCGUCCau----CCA-GGGCGa------GUCG---UGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 142727 | 0.68 | 0.699293 |
Target: 5'- gGCGCccGGG-GGGcCCgGCggagccCGGCGCCCg -3' miRNA: 3'- -CGCG--UCCaUCCaGGgCGa-----GUCGUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 54651 | 0.68 | 0.703218 |
Target: 5'- cGCGCGGGaugaGGGUCgcgggggcgcggcagCCGC-CGGCcgcGCCCu -3' miRNA: 3'- -CGCGUCCa---UCCAG---------------GGCGaGUCG---UGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 79654 | 0.67 | 0.709089 |
Target: 5'- cCGCAacguccGGcgcccCCCGCUCGGCGCCCc -3' miRNA: 3'- cGCGU------CCauccaGGGCGAGUCGUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 23394 | 0.67 | 0.709089 |
Target: 5'- cCGCGGGcgucGUCgCCGCgCAGCGCCg -3' miRNA: 3'- cGCGUCCauc-CAG-GGCGaGUCGUGGg -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 83508 | 0.67 | 0.709089 |
Target: 5'- cGCGCgagGGGgcGGg-CCGCgggCGcGCGCCCg -3' miRNA: 3'- -CGCG---UCCauCCagGGCGa--GU-CGUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 28103 | 0.67 | 0.709089 |
Target: 5'- cCGUGGGU-GGUCCCGCcugCGGU-CCUg -3' miRNA: 3'- cGCGUCCAuCCAGGGCGa--GUCGuGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 11979 | 0.67 | 0.709089 |
Target: 5'- -gGCGGGgcucUGGGUCCUGCgggucgagCGGCACa- -3' miRNA: 3'- cgCGUCC----AUCCAGGGCGa-------GUCGUGgg -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 147860 | 0.67 | 0.709089 |
Target: 5'- gGCGCAGaGcUGGGUCUCGUcgauGCGCuCCg -3' miRNA: 3'- -CGCGUC-C-AUCCAGGGCGagu-CGUG-GG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 81852 | 0.67 | 0.718822 |
Target: 5'- cGCGCAGGUacGGGUugcaggggacgUCCGCcCAGuCGCgCa -3' miRNA: 3'- -CGCGUCCA--UCCA-----------GGGCGaGUC-GUGgG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 88971 | 0.67 | 0.718822 |
Target: 5'- gGCGgAGGaucGG-CCgGCUCccccGGCGCCCg -3' miRNA: 3'- -CGCgUCCau-CCaGGgCGAG----UCGUGGG- -5' |
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31005 | 3' | -59.1 | NC_006560.1 | + | 117317 | 0.67 | 0.718822 |
Target: 5'- gGCGCggaGGGUgagcggucGGG-CCCGC-C-GCGCCCg -3' miRNA: 3'- -CGCG---UCCA--------UCCaGGGCGaGuCGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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